Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Reverse (-)

50316434 .. 50317573

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0328500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGAAATTGTGTTCCGGTTCACAAGTCCAAAGACTCGGCCTCAAAACTCCGATGCTCAAGCTATTCGAGGACAGAATGCGTCCTGATTCAAAAGCCTATTCAAGAAACCGCAGACTGTACACCGAGGCCGCATGTGACTGGTTTTCCAGAACTAAGTGATGAAGAGGATGTACATTTTTGTTCCGACCCCTGGGTAGAATCTGATGTTGAAGATTTCTTCAGTGTTAACAACGATCTTACCCCATCTAGAAGTGATACTCCAATCCACAAAAACAGTGAAATTATAGAAGTGGAAACCCCCAACTTGATAAACCACAAAAACAAATCCAAGGTTCAACCGGTTAAGCAACTGATTGAATTCTTTAATGAAAGCTTTACCGCTGATGAGGCCGGTGGCCATCAACAGATGCATTATGGGTCAGAAGCTGAATCTTCCCTATCTGACCTACCACGAAGTTCAGCGAATGTAAGCCCCTATCATTATTCGGTGGCAAATTTAGTTTCGGGTGCCAGGACAAGAAAAGCTACACAGTTTGCGCAATGCTTCCTGCCAAAGTTGGTGCAGATCATCAGCTTCAGTCAGAGGAAGAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

199

Amino Acids

22.32

Weight (kDa)

5.89

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	3 cut(s)	111, 131, 381
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	2 cut(s)	359, 496
AcuI	CTGAAG	2 cut(s)	205, 562
AfaI	GTAC	2 cut(s)	121, 174
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	5 cut(s)	92, 104, 212, 338, 359
AjnI	CCWGG	2 cut(s)	191, 512
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	5 cut(s)	63, 375, 428, 527, 576
AluI	AGCT	5 cut(s)	63, 375, 428, 527, 576
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	4 cut(s)	39, 128, 390, 397
ApoI	RAATTY	2 cut(s)	359, 496
AsiGI	ACCGGT	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	509
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BccI	CCATC	2 cut(s)	253, 408
BciT130I	CCWGG	2 cut(s)	193, 514
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	193, 514
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	193, 514
BmsI	GCATC	3 cut(s)	44, 399, 584
BpuEI	CTTGAG	1 cut(s)	43
BsaJI	CCNNGG	4 cut(s)	125, 191, 192, 330
BsaWI	WCCGGW	2 cut(s)	16, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	2 cut(s)	340, 392
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	193, 514
BseDI	CCNNGG	4 cut(s)	125, 191, 192, 330
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	584
BshFI	GGCC	4 cut(s)	41, 130, 392, 399
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	340
BsiSI	CCGG	3 cut(s)	17, 341, 393
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	4 cut(s)	41, 130, 392, 399
Bsp1407I	TGTACA	2 cut(s)	119, 172
Bsp143I	GATC	2 cut(s)	235, 567
BspACI	CCGC	3 cut(s)	111, 131, 381
BspANI	GGCC	4 cut(s)	41, 130, 392, 399
BspLI	GGNNCC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	340, 392
BsrGI	TGTACA	2 cut(s)	119, 172
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	2 cut(s)	340, 392
BssECI	CCNNGG	4 cut(s)	125, 191, 192, 330
BssMI	GATC	2 cut(s)	235, 567
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	193, 514
Bst4CI	ACNGT	3 cut(s)	119, 278, 534
Bst6I	CTCTTC	2 cut(s)	159, 584
BstAUI	TGTACA	2 cut(s)	119, 172
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	238, 570
BstMBI	GATC	2 cut(s)	235, 567
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	2 cut(s)	193, 514
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	191, 512
BsuRI	GGCC	4 cut(s)	41, 130, 392, 399
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	229, 283
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	2 cut(s)	340, 392
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	120, 173
CspAI	ACCGGT	1 cut(s)	340
CviAII	CATG	1 cut(s)	134
CviQI	GTAC	2 cut(s)	120, 173
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	237, 569
DpnII	GATC	2 cut(s)	235, 567
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	159, 584
EarI	CTCTTC	2 cut(s)	159, 584
Eco130I	CCWWGG	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	205, 562
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	191, 512
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	137
FaiI	YATR	3 cut(s)	135, 287, 417
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	249
FspI	TGCGCA	1 cut(s)	540
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	41, 130, 392, 399
HapII	CCGG	3 cut(s)	17, 341, 393
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	4 cut(s)	35, 88, 200, 431
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	17, 341, 393
Hpy166II	GTNNAC	3 cut(s)	22, 122, 229
Hpy188I	TCNGA	6 cut(s)	53, 187, 205, 424, 445, 585
Hpy188III	TCNNGA	4 cut(s)	85, 104, 149, 249
Hpy8I	GTNNAC	3 cut(s)	22, 122, 229
HpyCH4III	ACNGT	3 cut(s)	119, 278, 534
HpyCH4V	TGCA	2 cut(s)	412, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	539
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	235, 567
LweI	GCATC	3 cut(s)	44, 399, 584
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	237, 569
MboI	GATC	2 cut(s)	235, 567
MboII	GAAGA	4 cut(s)	176, 211, 224, 426
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	4 cut(s)	7, 282, 359, 496
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	52, 63, 120, 160, 382, 579
Mox20I	TGGCCA	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	3 cut(s)	228, 345, 366
Msp20I	TGGCCA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	17, 341, 393
MspR9I	CCNGG	2 cut(s)	193, 514
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	193, 514
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	2 cut(s)	235, 567
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	511
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	540
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	137
PasI	CCCWGGG	1 cut(s)	192
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	88, 200, 431
PinAI	ACCGGT	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	191, 512
PspGI	CCWGG	2 cut(s)	191, 512
PspN4I	GGNNCC	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	2 cut(s)	121, 174
RsaNI	GTAC	2 cut(s)	120, 173
SaqAI	TTAA	3 cut(s)	228, 345, 366
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	235, 567
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	193, 514
SetI	ASST	7 cut(s)	65, 336, 377, 430, 450, 529, 578
SfaNI	GCATC	3 cut(s)	44, 399, 584
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	4 cut(s)	7, 282, 359, 496
SsiI	CCGC	3 cut(s)	111, 131, 381
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	191, 512
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	119, 278, 534
TaqI	TCGA	1 cut(s)	68
TasI	AATT	4 cut(s)	7, 282, 359, 496
TatI	WGTACW	2 cut(s)	119, 172
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	3 cut(s)	88, 200, 431
Tru1I	TTAA	3 cut(s)	228, 345, 366
Tru9I	TTAA	3 cut(s)	228, 345, 366
TscAI	CASTG	2 cut(s)	229, 283
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	177, 384
TspRI	CASTG	2 cut(s)	229, 283
XapI	RAATTY	2 cut(s)	359, 496
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.