Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Forward (+)

1845597 .. 1846954

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAAGCCGCATCCTCAGCGCTCGAAGATGGGAAAATCGATGTCTCTTGTCAGAAAGTCGATTTTAAAGATGTCTCTTCCCCTCGTGGGGAGCTGGCAGAATGCAGGATATGCCAGGATGAAGATCAGGATTCAAACATGGAGACACCGTGCTCTTGTTGTGGCAGCTTAAGGTACGCCCACAGAAGATGTGTACAGAGGTGGTGTAATGAAAAAGGTGACACAGTTTGTGAGATATGCCATCAGCAATTCAAGCCTGGTTACACAGCTCCTCCCCCGCTGTTTCAATTGGGGCGTATACCTATGAACTTCAGGGGAAACTGGGAGATTTCGAGAAGGGACAGTCCGCGAATCATAGCAATGGTTGCAACTGATCGCGATTATCTTAACCCTGGCTATGATGATTACTCAGCTTCTACTGCAAGAAATGTGTGCTGCTGTCGTTGGCTCGCTTTCATTTTCATGGTTCTGCTTATTCTCCGGCATACGCTTCCTCTCATCATCAGCGGAAACAAAGAGTACTCTCTCCCACTTGTTATGTTGTTACTATTACGAACTGTTGGGATTGTCTTGCCAATCTATGCAATGTTGATGGCAGTAACTACTCTTCAGCGTCGGCGAAGCCACCAAGATCTTTCGAGTTCATCAGCAACCTCCTCAGATGAAGAAACAGAGCCAACAATCCTGCAGCTTGAGCCGGAGCCGGAGCCCCATTTCATTCGTGTTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

244

Amino Acids

27.61

Weight (kDa)

5.98

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	2 cut(s)	349, 378
AciI	CCGC	4 cut(s)	9, 278, 347, 507
AcuI	CTGAAG	2 cut(s)	295, 593
AfaI	GTAC	3 cut(s)	176, 195, 521
AfeI	AGCGCT	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	87, 88
AflII	CTTAAG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	135, 253, 287
AjnI	CCWGG	3 cut(s)	114, 256, 391
AluBI	AGCT	5 cut(s)	94, 168, 269, 413, 691
AluI	AGCT	5 cut(s)	94, 168, 269, 413, 691
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	3 cut(s)	49, 79, 137
Aor51HI	AGCGCT	1 cut(s)	21
ApeKI	GCWGC	3 cut(s)	165, 435, 688
AspLEI	GCGC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	711
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BauI	CACGAG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	177, 422, 700
BccI	CCATC	3 cut(s)	23, 249, 586
BciT130I	CCWGG	3 cut(s)	116, 258, 393
BcoDI	GTCTC	3 cut(s)	49, 79, 137
BfmI	CTRYAG	1 cut(s)	686
BfoI	RGCGCY	1 cut(s)	23
BfrI	CTTAAG	1 cut(s)	169
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	4 cut(s)	9, 166, 436, 689
BlsI	GCNGC	4 cut(s)	10, 167, 437, 690
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	3 cut(s)	116, 258, 393
BmiI	GGNNCC	2 cut(s)	702, 708
BmrFI	CCNGG	3 cut(s)	116, 258, 393
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	713
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	391
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 256, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 88
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	2 cut(s)	366, 591
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	3 cut(s)	116, 258, 393
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	11, 124
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	87, 88
BseMI	GCAATG	2 cut(s)	366, 591
BseMII	CTCAG	3 cut(s)	30, 423, 672
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	261, 646
BseXI	GCAGC	3 cut(s)	177, 422, 700
Bsh1236I	CGCG	2 cut(s)	349, 378
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	481, 698, 704
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	87, 88
BsmAI	GTCTC	3 cut(s)	49, 79, 137
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	155, 711
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	124, 373, 631
Bsp68I	TCGCGA	1 cut(s)	378
BspACI	CCGC	4 cut(s)	9, 278, 347, 507
BspCNI	CTCAG	3 cut(s)	29, 422, 671
BspDI	ATCGAT	1 cut(s)	39
BspFNI	CGCG	2 cut(s)	349, 378
BspLI	GGNNCC	2 cut(s)	702, 708
BspMAI	CTGCAG	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	366, 591
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	3 cut(s)	124, 373, 631
BssNAI	GTATAC	1 cut(s)	299
BssSI	CACGAG	1 cut(s)	84
Bst1107I	GTATAC	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	3 cut(s)	116, 258, 393
Bst4CI	ACNGT	4 cut(s)	150, 226, 344, 559
Bst6I	CTCTTC	2 cut(s)	82, 612
BstAFI	CTTAAG	1 cut(s)	169
BstAPI	GCANNNNNTGC	2 cut(s)	111, 365
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	6, 96, 450
BstDEI	CTNAG	3 cut(s)	16, 409, 658
BstF5I	GGATG	2 cut(s)	11, 124
BstFNI	CGCG	2 cut(s)	349, 378
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	127, 376, 634
BstMAI	GTCTC	3 cut(s)	49, 79, 137
BstMBI	GATC	3 cut(s)	124, 373, 631
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 111, 253, 365, 419, 694
BstNI	CCWGG	3 cut(s)	116, 258, 393
BstSCI	CCNGG	3 cut(s)	114, 256, 391
BstSFI	CTRYAG	1 cut(s)	686
BstUI	CGCG	2 cut(s)	349, 378
BstV1I	GCAGC	3 cut(s)	177, 422, 700
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	11, 124
BtuMI	TCGCGA	1 cut(s)	378
Cac8I	GCNNGC	3 cut(s)	6, 96, 450
CfoI	GCGC	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	3 cut(s)	175, 194, 520
CviAII	CATG	2 cut(s)	139, 463
CviQI	GTAC	3 cut(s)	175, 194, 520
DdeI	CTNAG	3 cut(s)	16, 409, 658
DpnI	GATC	3 cut(s)	126, 375, 633
DpnII	GATC	3 cut(s)	124, 373, 631
DraI	TTTAAA	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	82, 612
EarI	CTCTTC	2 cut(s)	82, 612
Eco24I	GRGCYC	1 cut(s)	711
Eco47III	AGCGCT	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	295, 593
EcoRII	CCWGG	3 cut(s)	114, 256, 391
EcoT38I	GRGCYC	1 cut(s)	711
FaeI	CATG	2 cut(s)	142, 466
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	2 cut(s)	138, 462
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	9, 166, 436, 689
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	4 cut(s)	9, 166, 436, 689
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	4 cut(s)	9, 166, 436, 689
HaeII	RGCGCY	1 cut(s)	23
HapII	CCGG	3 cut(s)	481, 698, 704
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	142, 466
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	2 cut(s)	131, 351
HpaII	CCGG	3 cut(s)	481, 698, 704
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	194, 299
Hpy188I	TCNGA	2 cut(s)	54, 661
Hpy188III	TCNNGA	3 cut(s)	128, 333, 377
Hpy8I	GTNNAC	2 cut(s)	194, 299
Hpy99I	CGWCG	1 cut(s)	618
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	4 cut(s)	150, 226, 344, 559
HpyCH4V	TGCA	6 cut(s)	4, 105, 368, 422, 584, 688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 111, 253, 365, 419, 694
HpyF3I	CTNAG	3 cut(s)	16, 409, 658
Hsp92II	CATG	2 cut(s)	142, 466
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	124, 373, 631
LmnI	GCTCC	4 cut(s)	91, 274, 700, 706
Lsp1109I	GCAGC	3 cut(s)	177, 422, 700
LweI	GCATC	1 cut(s)	20
MaeIII	GTNAC	4 cut(s)	218, 260, 543, 598
MalI	GATC	3 cut(s)	126, 375, 633
MboI	GATC	3 cut(s)	124, 373, 631
MboII	GAAGA	6 cut(s)	38, 69, 134, 198, 599, 677
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	155, 711
MluCI	AATT	2 cut(s)	248, 287
MnlI	CCTC	7 cut(s)	25, 93, 192, 282, 504, 664, 667
MseI	TTAA	3 cut(s)	66, 170, 387
MslI	CAYNNNNRTG	2 cut(s)	359, 461
MspA1I	CMGCKG	2 cut(s)	280, 507
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	3 cut(s)	481, 698, 704
MspR9I	CCNGG	3 cut(s)	116, 258, 393
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	3 cut(s)	116, 258, 393
MvnI	CGCG	2 cut(s)	349, 378
MwoI	GCNNNNNNNGC	6 cut(s)	17, 111, 253, 365, 419, 694
NdeII	GATC	3 cut(s)	124, 373, 631
NlaIII	CATG	2 cut(s)	142, 466
NlaIV	GGNNCC	2 cut(s)	702, 708
NmuCI	GTSAC	1 cut(s)	218
NruI	TCGCGA	1 cut(s)	378
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	131, 351
PkrI	GCNGC	4 cut(s)	10, 167, 437, 690
Psp6I	CCWGG	3 cut(s)	114, 256, 391
PspGI	CCWGG	3 cut(s)	114, 256, 391
PspN4I	GGNNCC	2 cut(s)	702, 708
PstI	CTGCAG	1 cut(s)	690
PsuI	RGATCY	1 cut(s)	631
RruI	TCGCGA	1 cut(s)	378
RsaI	GTAC	3 cut(s)	176, 195, 521
RsaNI	GTAC	3 cut(s)	175, 194, 520
RseI	CAYNNNNRTG	2 cut(s)	359, 461
SaqAI	TTAA	3 cut(s)	66, 170, 387
SatI	GCNGC	4 cut(s)	9, 166, 436, 689
Sau3AI	GATC	3 cut(s)	124, 373, 631
ScaI	AGTACT	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	116, 258, 393
SduI	GDGCHC	2 cut(s)	155, 711
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	359, 461
SmlI	CTYRAG	2 cut(s)	169, 692
SmoI	CTYRAG	2 cut(s)	169, 692
Sse9I	AATT	2 cut(s)	248, 287
SsiI	CCGC	4 cut(s)	9, 278, 347, 507
StyD4I	CCNGG	3 cut(s)	114, 256, 391
TaaI	ACNGT	4 cut(s)	150, 226, 344, 559
TaqI	TCGA	5 cut(s)	24, 39, 60, 332, 638
TasI	AATT	2 cut(s)	248, 287
TatI	WGTACW	2 cut(s)	193, 519
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	131, 351
Tru1I	TTAA	3 cut(s)	66, 170, 387
Tru9I	TTAA	3 cut(s)	66, 170, 387
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	165, 435, 688
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	8 cut(s)	135, 225, 320, 445, 451, 633, 678, 706
Vha464I	CTTAAG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	298
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.