Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Forward (+)

4759107 .. 4760443

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006145

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGTGAACACTTTGTATTGTTGGTGGATCGATTGCTCACCGAATCCACATTAGAGGCAATCGAGTGCAGAAACAGGTCGATGCAATTAGCCACATCCTCAGCAGTCGAAAATCCGAAACTTGATTACTCAAATTGCCAGAAGATAGATTTTGCGGACATTGTATTAACTCCAAGGGAAATAGTAGAATGCAGAATATGTCAGGATGAGGATGAAGATTCGAACATGGAGACGCCTTGTTCTTGTTGTGGCAGCTTAAAGTACGCTCACCGCAGATGTGTACAGAGATGGTGTAATGAGAAAGGTGACACGCTGTGTGAGATATGCCACCAACAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTGTTTCAATTCGGGCGTATACCTATGAACTTCAGGGGGAACTGGGAAGTTTCAAGAAGGGGCAGTCCACGTATTATAATGGTTTCAACTGATCGTGAGTTCCTGAATCCTGATCATGAGTATGATGAGTATTCTGCTTCTACTGCAAGAAGTGTGTTATGGTGTCGATCAGTCGCCTTCATTTTCATGGTTTTGCTGATTTTAAGGCACACTCTTCCTCTCATAATTAGTGGAAACAAAGACTACTCCTTCCCACTTATTATGTTATTAGTTTTAAGAACTGTTGGGATCGTTGTGCCAATTTATGTAATGGTGAGGCTAGTGACTGCTATTCAGCGACGCCGAAGCCAACCAGACTTTTCCAGTTCGTCGATGACTTCCTCCGACAATGAAGAAACAGAATCTTCTTCAGTCCTGCAGCCTCATATCATTCGAATAGCAACAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

273

Amino Acids

31.15

Weight (kDa)

5.74

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	64 - 109	2.3e-12	RING-variant domain
DUF3675	PF12428	115 - 229	1.8e-40	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	385
AciI	CCGC	2 cut(s)	155, 271
AclWI	GGATC	2 cut(s)	36, 662
AcuI	CTGAAG	2 cut(s)	382, 759
AcyI	GRCGYC	2 cut(s)	233, 706
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	263, 282
AgsI	TTSAA	4 cut(s)	340, 374, 420, 453
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	255, 356
AluI	AGCT	2 cut(s)	255, 356
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	36, 662
ApeKI	GCWGC	2 cut(s)	252, 784
AsuHPI	GGTGA	5 cut(s)	17, 31, 260, 317, 691
AsuII	TTCGAA	2 cut(s)	221, 799
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	264, 796
BccI	CCATC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	782
BisI	GCNGC	2 cut(s)	253, 785
BlsI	GCNGC	2 cut(s)	254, 786
Bme1390I	CCNGG	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	100
Bpu14I	TTCGAA	2 cut(s)	221, 799
Bsa29I	ATCGAT	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	2 cut(s)	233, 706
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bse1I	ACTGG	2 cut(s)	413, 729
BseBI	CCWGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	3 cut(s)	95, 211, 217
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	413, 729
BseRI	GAGGAG	2 cut(s)	348, 351
BseXI	GCAGC	2 cut(s)	264, 796
BsgI	GTGCAG	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	194
Bsp119I	TTCGAA	2 cut(s)	221, 799
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	28, 457, 478, 533, 654
BspACI	CCGC	2 cut(s)	155, 271
BspCNI	CTCAG	1 cut(s)	113
BspDI	ATCGAT	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	481
BspMAI	CTGCAG	1 cut(s)	786
BspPI	GGATC	2 cut(s)	36, 662
BspT104I	TTCGAA	2 cut(s)	221, 799
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	413, 729
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	5 cut(s)	28, 457, 478, 533, 654
BssNAI	GTATAC	1 cut(s)	386
BssNI	GRCGYC	2 cut(s)	233, 706
BssT1I	CCWWGG	1 cut(s)	173
Bst1107I	GTATAC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	369, 649
Bst6I	CTCTTC	1 cut(s)	585
BstACI	GRCGYC	2 cut(s)	233, 706
BstAUI	TGTACA	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	437
BstBI	TTCGAA	2 cut(s)	221, 799
BstDEI	CTNAG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	95, 211, 217
BstKTI	GATC	5 cut(s)	31, 460, 481, 536, 657
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	5 cut(s)	28, 457, 478, 533, 654
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	782
BstV1I	GCAGC	2 cut(s)	264, 796
BstZ17I	GTATAC	1 cut(s)	386
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	95, 211, 217
BtsIMutI	CAGTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	481
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	2 cut(s)	241, 714
Csp6I	GTAC	2 cut(s)	262, 281
CviAII	CATG	3 cut(s)	226, 482, 553
CviJI	RGCY	7 cut(s)	92, 255, 343, 356, 685, 714, 787
CviKI_1	RGCY	7 cut(s)	92, 255, 343, 356, 685, 714, 787
CviQI	GTAC	2 cut(s)	262, 281
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	5 cut(s)	30, 459, 480, 535, 656
DpnII	GATC	5 cut(s)	28, 457, 478, 533, 654
DraIII	CACNNNGTG	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	382, 759
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	3 cut(s)	229, 485, 556
FatI	CATG	3 cut(s)	225, 481, 552
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	253, 785
FokI	GGATG	3 cut(s)	82, 218, 224
Fsp4HI	GCNGC	2 cut(s)	253, 785
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	2 cut(s)	253, 785
HgaI	GACGC	2 cut(s)	241, 714
Hin1I	GRCGYC	2 cut(s)	233, 706
Hin1II	CATG	3 cut(s)	229, 485, 556
HinfI	GANTC	4 cut(s)	44, 218, 472, 767
HphI	GGTGA	5 cut(s)	17, 31, 260, 317, 691
Hpy166II	GTNNAC	4 cut(s)	8, 281, 386, 434
Hpy188I	TCNGA	2 cut(s)	117, 751
Hpy188III	TCNNGA	6 cut(s)	203, 420, 461, 469, 476, 482
Hpy8I	GTNNAC	4 cut(s)	8, 281, 386, 434
Hpy99I	CGWCG	2 cut(s)	708, 739
HpyAV	CCTTC	3 cut(s)	417, 553, 625
HpyCH4III	ACNGT	2 cut(s)	369, 649
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	69, 85, 192, 512, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	2 cut(s)	233, 706
Hsp92II	CATG	3 cut(s)	229, 485, 556
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	28, 457, 478, 533, 654
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	264, 796
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	305, 688
MalI	GATC	5 cut(s)	30, 459, 480, 535, 656
MboI	GATC	5 cut(s)	28, 457, 478, 533, 654
MboII	GAAGA	6 cut(s)	154, 227, 572, 762, 765, 770
MluCI	AATT	7 cut(s)	86, 133, 335, 374, 591, 666, 814
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	9 cut(s)	49, 109, 202, 369, 372, 594, 675, 757, 798
MseI	TTAA	5 cut(s)	167, 257, 569, 641, 817
MslI	CAYNNNNRTG	2 cut(s)	486, 551
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	5 cut(s)	28, 457, 478, 533, 654
NlaIII	CATG	3 cut(s)	229, 485, 556
NmuCI	GTSAC	2 cut(s)	305, 688
NspV	TTCGAA	2 cut(s)	221, 799
PagI	TCATGA	1 cut(s)	481
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	4 cut(s)	44, 218, 472, 767
PkrI	GCNGC	2 cut(s)	254, 786
Ppu21I	YACGTR	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PstI	CTGCAG	1 cut(s)	786
RsaI	GTAC	2 cut(s)	263, 282
RsaNI	GTAC	2 cut(s)	262, 281
RseI	CAYNNNNRTG	2 cut(s)	486, 551
SaqAI	TTAA	5 cut(s)	167, 257, 569, 641, 817
SatI	GCNGC	2 cut(s)	253, 785
Sau3AI	GATC	5 cut(s)	28, 457, 478, 533, 654
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	6 cut(s)	80, 257, 307, 358, 391, 439
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	782
SfuI	TTCGAA	2 cut(s)	221, 799
SmiMI	CAYNNNNRTG	2 cut(s)	486, 551
Sse9I	AATT	7 cut(s)	86, 133, 335, 374, 591, 666, 814
SsiI	CCGC	2 cut(s)	155, 271
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	369, 649
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	8 cut(s)	31, 63, 80, 108, 221, 532, 737, 799
TasI	AATT	7 cut(s)	86, 133, 335, 374, 591, 666, 814
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	4 cut(s)	44, 218, 472, 767
Tru1I	TTAA	5 cut(s)	167, 257, 569, 641, 817
Tru9I	TTAA	5 cut(s)	167, 257, 569, 641, 817
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	305, 688
TseI	GCWGC	2 cut(s)	252, 784
Tsp45I	GTSAC	2 cut(s)	305, 688
TspDTI	ATGAA	5 cut(s)	228, 407, 535, 541, 771
TspRI	CASTG	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	385
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.