Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Reverse (-)

60355560 .. 60357903

Gene Structure 2344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG387000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTGAACACTTTGTATTGTTGGTGGATCGATTGCTCACCGAATCCACATTAGAGGCAATCGAGAGCAGAAACAGGTCGATGCAATTAGCCACATCCTCAGCAGTCGAAAATCCGAAACTTGATTACTCAAATTGCCAGAAGATAGATTTTGCGGACATTTTATTAACTCCAAGGAAAATAGTAGAATGCAGAATATGTCAGGATGAGGATGAAGATTCGAACATGGAGACGCCTTGTTCTTGTTGTGGCAGCTTAAAGTACGCTCACCGCAGATGTGTACAGAGATGGTGTAATGAGAAAGGTGACACGCTGTGTGAGATATGCCACCAACAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTGTTTCAAATTGGGCGTATACCTATGAACTTCAGGGGGAACTGGGAAGTTTCAAGAAGGGGCAGTCCACGTATTATAATGGTTTCAACTGATCGTGAGTTCCTGAATCCTGATCATGAGTATGATGAGTATTCTGCTTCTACTGCAAGAAGTGTATTATGGTGTCGATCAGTCGCGTTCATTGTAATCTCTCATTCTATTGTTGAACAAATGGTGCATATCATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

198

Amino Acids

22.79

Weight (kDa)

5.56

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	64 - 109	1.4e-12	RING-variant domain
DUF3675	PF12428	115 - 187	3.5e-17	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	385
AccII	CGCG	1 cut(s)	542
AciI	CCGC	2 cut(s)	155, 271
AclWI	GGATC	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	263, 282
AgsI	TTSAA	5 cut(s)	340, 374, 420, 453, 572
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	255, 356
AluI	AGCT	2 cut(s)	255, 356
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	252
AsuHPI	GGTGA	4 cut(s)	17, 31, 260, 317
AsuII	TTCGAA	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	224
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bse1I	ACTGG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	3 cut(s)	95, 211, 217
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	348, 351
BseXI	GCAGC	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	542
BshVI	ATCGAT	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	28, 457, 478, 533
BspACI	CCGC	2 cut(s)	155, 271
BspCNI	CTCAG	1 cut(s)	113
BspDI	ATCGAT	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	481
BspPI	GGATC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	4 cut(s)	28, 457, 478, 533
BssNAI	GTATAC	1 cut(s)	386
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	173
Bst1107I	GTATAC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	95, 211, 217
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	4 cut(s)	31, 460, 481, 536
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	28, 457, 478, 533
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	264
BstZ17I	GTATAC	1 cut(s)	386
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	95, 211, 217
BtsIMutI	CAGTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	481
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	262, 281
CviAII	CATG	2 cut(s)	226, 482
CviJI	RGCY	4 cut(s)	92, 255, 343, 356
CviKI_1	RGCY	4 cut(s)	92, 255, 343, 356
CviQI	GTAC	2 cut(s)	262, 281
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	4 cut(s)	30, 459, 480, 535
DpnII	GATC	4 cut(s)	28, 457, 478, 533
DraIII	CACNNNGTG	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	2 cut(s)	229, 485
FatI	CATG	2 cut(s)	225, 481
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	3 cut(s)	82, 218, 224
Fsp4HI	GCNGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	229, 485
HinfI	GANTC	3 cut(s)	44, 218, 472
HphI	GGTGA	4 cut(s)	17, 31, 260, 317
Hpy166II	GTNNAC	4 cut(s)	8, 281, 386, 434
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	7 cut(s)	64, 203, 420, 461, 469, 476, 482
Hpy8I	GTNNAC	4 cut(s)	8, 281, 386, 434
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	4 cut(s)	85, 192, 512, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	229, 485
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	28, 457, 478, 533
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	9 cut(s)	61, 152, 188, 330, 357, 385, 394, 482, 489
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	30, 459, 480, 535
MboI	GATC	4 cut(s)	28, 457, 478, 533
MboII	GAAGA	2 cut(s)	154, 227
MluCI	AATT	4 cut(s)	86, 133, 335, 375
MnlI	CCTC	5 cut(s)	49, 109, 202, 369, 372
MseI	TTAA	2 cut(s)	167, 257
MslI	CAYNNNNRTG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	4 cut(s)	28, 457, 478, 533
NlaIII	CATG	2 cut(s)	229, 485
NmuCI	GTSAC	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	221
PagI	TCATGA	1 cut(s)	481
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	3 cut(s)	44, 218, 472
PkrI	GCNGC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
RsaI	GTAC	2 cut(s)	263, 282
RsaNI	GTAC	2 cut(s)	262, 281
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	167, 257
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	4 cut(s)	28, 457, 478, 533
ScrFI	CCNGG	1 cut(s)	345
SetI	ASST	6 cut(s)	80, 257, 307, 358, 391, 439
SfaNI	GCATC	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	4 cut(s)	86, 133, 335, 375
SsiI	CCGC	2 cut(s)	155, 271
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	7 cut(s)	31, 63, 80, 108, 221, 532, 591
TasI	AATT	4 cut(s)	86, 133, 335, 375
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	44, 218, 472
Tru1I	TTAA	2 cut(s)	167, 257
Tru9I	TTAA	2 cut(s)	167, 257
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	228, 407, 535
TspRI	CASTG	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.