Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005054.1

Orthogroup ID

OG0002299

Physical Location & Seq

Genomic Coordinates Forward (+)

56159 .. 57414

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005054.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgcaattagccacatcctcagcagtcgaaaatccgaaacttgattactcaaattgccagaagatagattttgcggacattgtattaactccaaggaaaatagtagaatgcagaatatgtcaggatgaggatgaagattcgaacatggagacgccttgttcttgttgtggcagcttaaagtacgctcaccgcagatgtgtacagagatggtgtaatgagaaaggtgacacgctgtgtgagatatgccaccaacaattcaagcctggttatacagctcctcctccactgtttcaaattgggcgtatacctatgaacttcagggggaactgggaagtttcaagaaggggcagtccacggattataatggtttcaactgatcgtgagttcctgaatcctgatcatgagtatgatgagtattctgcttctactgcaagaagtgtattatggtgtcgatcagtcgcgttcattttcatggttttgctgattttaaggcacactcttcctctcataattagtggaaacaaagactactccttcccacttattatgttattagttttaagaactgttgggatcgttgtgccaatttatgtaatggtgaggctagtgactgctattcagcgacgccgaagccaaccagatttttccagttcgtcgatgacttcctccgacgatgaagaaacagaatcttcttcagtcctgcagcctcatatcattcgaatagcaacagaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

245

Amino Acids

28.0

Weight (kDa)

6.22

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01275 AT2G01275 AT2G01275 AT2G01275 AT2G01275
fragaria_vesca	FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130 FvH4_4g32130
malus_domestica	MD13G1028300.v1.1 MD16G1031200.v1.1
prunus_persica	Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1 Prupe.1G321900_v2.0.a1
pyrus_communis	pycom13g02670 pycom16g02720
rosa_chinensis	RchiOBHm_Chr4g0440831
rosa_laevigata	RLG00000006145
rosa_multiflora	Rmu_sc0005054.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381660
rosa_rugosa	Rorug04G0328400 Rorug04G0328500 Rorug04G0328600 Rorug04G0328600 Rorug04G0328700 Rorug04G0328800
rosa_samantha	Rh4BG393100 Rh4CG407900 Rh4DG387000
rosa_wichuraiana	Rw4G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	304
AccII	CGCG	1 cut(s)	461
AciI	CCGC	2 cut(s)	74, 190
AclWI	GGATC	1 cut(s)	581
AcuI	CTGAAG	2 cut(s)	301, 678
AcyI	GRCGYC	2 cut(s)	152, 625
AdeI	CACNNNGTG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	182, 201
AgsI	TTSAA	4 cut(s)	259, 293, 339, 372
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	2 cut(s)	174, 275
AluI	AGCT	2 cut(s)	174, 275
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	581
ApeKI	GCWGC	2 cut(s)	171, 703
AsuHPI	GGTGA	3 cut(s)	179, 236, 610
AsuII	TTCGAA	2 cut(s)	140, 718
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	183, 715
BccI	CCATC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	701
BisI	GCNGC	2 cut(s)	172, 704
BlsI	GCNGC	2 cut(s)	173, 705
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	2 cut(s)	140, 718
BsaHI	GRCGYC	2 cut(s)	152, 625
BsaJI	CCNNGG	2 cut(s)	92, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	2 cut(s)	332, 648
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	92, 353
BseGI	GGATG	3 cut(s)	14, 130, 136
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	332, 648
BseRI	GAGGAG	2 cut(s)	267, 270
BseXI	GCAGC	2 cut(s)	183, 715
Bsh1236I	CGCG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	143
BsmBI	CGTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	113
Bsp119I	TTCGAA	2 cut(s)	140, 718
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	376, 397, 452, 573
BspACI	CCGC	2 cut(s)	74, 190
BspCNI	CTCAG	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	705
BspPI	GGATC	1 cut(s)	581
BspT104I	TTCGAA	2 cut(s)	140, 718
BsrGI	TGTACA	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	332, 648
BssECI	CCNNGG	2 cut(s)	92, 353
BssMI	GATC	4 cut(s)	376, 397, 452, 573
BssNAI	GTATAC	1 cut(s)	305
BssNI	GRCGYC	2 cut(s)	152, 625
BssT1I	CCWWGG	1 cut(s)	92
Bst1107I	GTATAC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	288, 568
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	2 cut(s)	152, 625
BstAUI	TGTACA	1 cut(s)	199
BstBI	TTCGAA	2 cut(s)	140, 718
BstDEI	CTNAG	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	14, 130, 136
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	4 cut(s)	379, 400, 455, 576
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	376, 397, 452, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	701
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	183, 715
BstZ17I	GTATAC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	353
BtsCI	GGATG	3 cut(s)	14, 130, 136
BtsIMutI	CAGTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	400
CseI	GACGC	2 cut(s)	160, 633
Csp6I	GTAC	2 cut(s)	181, 200
CviAII	CATG	3 cut(s)	145, 401, 472
CviJI	RGCY	7 cut(s)	11, 174, 262, 275, 604, 633, 706
CviKI_1	RGCY	7 cut(s)	11, 174, 262, 275, 604, 633, 706
CviQI	GTAC	2 cut(s)	181, 200
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	4 cut(s)	378, 399, 454, 575
DpnII	GATC	4 cut(s)	376, 397, 452, 573
DraIII	CACNNNGTG	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	301, 678
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	3 cut(s)	148, 404, 475
FatI	CATG	3 cut(s)	144, 400, 471
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	172, 704
FokI	GGATG	2 cut(s)	137, 143
Fsp4HI	GCNGC	2 cut(s)	172, 704
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	2 cut(s)	172, 704
HgaI	GACGC	2 cut(s)	160, 633
Hin1I	GRCGYC	2 cut(s)	152, 625
Hin1II	CATG	3 cut(s)	148, 404, 475
HinfI	GANTC	3 cut(s)	137, 391, 686
HphI	GGTGA	3 cut(s)	179, 236, 610
Hpy166II	GTNNAC	3 cut(s)	200, 305, 353
Hpy188I	TCNGA	2 cut(s)	36, 670
Hpy188III	TCNNGA	6 cut(s)	122, 339, 380, 388, 395, 401
Hpy8I	GTNNAC	3 cut(s)	200, 305, 353
Hpy99I	CGWCG	3 cut(s)	627, 658, 674
HpyAV	CCTTC	2 cut(s)	336, 544
HpyCH4III	ACNGT	2 cut(s)	288, 568
HpyCH4V	TGCA	4 cut(s)	4, 111, 431, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	1 cut(s)	19
Hsp92I	GRCGYC	2 cut(s)	152, 625
Hsp92II	CATG	3 cut(s)	148, 404, 475
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	376, 397, 452, 573
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	183, 715
MaeI	CTAG	1 cut(s)	605
MaeIII	GTNAC	2 cut(s)	224, 607
MalI	GATC	4 cut(s)	378, 399, 454, 575
MboI	GATC	4 cut(s)	376, 397, 452, 573
MboII	GAAGA	6 cut(s)	73, 146, 491, 681, 684, 689
MluCI	AATT	7 cut(s)	5, 52, 254, 294, 510, 585, 733
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	8 cut(s)	28, 121, 288, 291, 513, 594, 676, 717
MseI	TTAA	5 cut(s)	86, 176, 488, 560, 736
MslI	CAYNNNNRTG	2 cut(s)	405, 470
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	4 cut(s)	376, 397, 452, 573
NlaIII	CATG	3 cut(s)	148, 404, 475
NmuCI	GTSAC	2 cut(s)	224, 607
NspV	TTCGAA	2 cut(s)	140, 718
PagI	TCATGA	1 cut(s)	400
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	137, 391, 686
PkrI	GCNGC	2 cut(s)	173, 705
PsiI	TTATAA	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	705
RsaI	GTAC	2 cut(s)	182, 201
RsaNI	GTAC	2 cut(s)	181, 200
RseI	CAYNNNNRTG	2 cut(s)	405, 470
SaqAI	TTAA	5 cut(s)	86, 176, 488, 560, 736
SatI	GCNGC	2 cut(s)	172, 704
Sau3AI	GATC	4 cut(s)	376, 397, 452, 573
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	4 cut(s)	176, 226, 277, 310
SfcI	CTRYAG	1 cut(s)	701
SfuI	TTCGAA	2 cut(s)	140, 718
SmiMI	CAYNNNNRTG	2 cut(s)	405, 470
Sse9I	AATT	7 cut(s)	5, 52, 254, 294, 510, 585, 733
SsiI	CCGC	2 cut(s)	74, 190
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	288, 568
TaqI	TCGA	5 cut(s)	27, 140, 451, 656, 718
TasI	AATT	7 cut(s)	5, 52, 254, 294, 510, 585, 733
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	3 cut(s)	137, 391, 686
Tru1I	TTAA	5 cut(s)	86, 176, 488, 560, 736
Tru9I	TTAA	5 cut(s)	86, 176, 488, 560, 736
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	224, 607
TseI	GCWGC	2 cut(s)	171, 703
Tsp45I	GTSAC	2 cut(s)	224, 607
TspDTI	ATGAA	5 cut(s)	147, 326, 454, 460, 690
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	304
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.