AT2G01905

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009126
Physical Location & Seq
Forward (+)
410321 .. 416000
5680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01905.1

Sequence Viewer

Length: 705 bp
ATGTCTACAGAGATCGGTCATCTTCGTCGGAGATTAGTCGAGTTCTTGATTCAATCTACTACTCTACTCGAACTTCCTCCGATCGTTAAATATTCAGCTCTATCGCTATTCTTCGATCGATTTCGTCCTAATTTAGTCAGGTTTTTACAGAAAAAGAAAGCAGAACATTGGCTATTGCAACCTTTGAATGAAAGCAATCTGCAGTTATTTGTGTTAATCTCCATTTGGATCTCATGTAAAATGCATTGTACACGAGGTTTATCGGTTCATAGTTTGAAATCCTTTGGGGATAAAGTGATTACTGAGCAACTCTTCATGGTTCGCGATTTCTTGGATGCAGAACTGGTTTTTCTGAAGGTTCTGAAATTTGAGATTGGCACTCTAAATATAGCTTATACACGGCTTGAAGATCTTCTTATTCAGTTCAAAGAAGTTGCAAAAGTTGGGGAACAGTTGAACTTTGAAGCATGTATGGACATGATGGATCTTCTTTACGAGAAAGAGGACACATCCCTTCTTTATCAATCTTCAAAATCTCTGGCTGCTTCCATTTTGGTCTCTTCTTACATAATAACAGTGCCTAAACAGCAGTACGAATTCCCTATTCTCCCCTGGGTTAAAATGGTGACAAATAAGGAAGAAAGGGAGGTGGTGGAGCTTGTTGAATACATACTTGCTCATGTCCTTTACTCGAACTCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

234

Amino Acids

27.3

Weight (kDa)

6.24

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 7 - 125 5.9e-06 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 324
AclWI GGATC 2 cut(s) 236, 492
AcsI RAATTY 2 cut(s) 365, 596
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 2 cut(s) 250, 593
AgsI TTSAA 9 cut(s) 53, 187, 277, 407, 427, 457, 464, 531, 665
AjnI CCWGG 1 cut(s) 611
AluBI AGCT 3 cut(s) 98, 392, 658
AluI AGCT 3 cut(s) 98, 392, 658
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 2 cut(s) 236, 492
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 2 cut(s) 365, 596
Asp700I GAANNNNTTC 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 637
BauI CACGAG 1 cut(s) 252
BbvI GCAGC 1 cut(s) 529
BccI CCATC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 613
BcoDI GTCTC 1 cut(s) 562
BfmI CTRYAG 2 cut(s) 6, 200
BglII AGATCT 1 cut(s) 409
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 613
BmrFI CCNGG 1 cut(s) 613
BmsI GCATC 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 611, 612
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 613
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 611, 612
BseGI GGATG 2 cut(s) 340, 509
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 324
Bsh1285I CGRYCG 2 cut(s) 84, 118
BshVI ATCGAT 1 cut(s) 118
BsiEI CGRYCG 2 cut(s) 84, 118
BsmAI GTCTC 1 cut(s) 562
Bso31I GGTCTC 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 6 cut(s) 12, 81, 115, 228, 409, 484
Bsp68I TCGCGA 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 118
BspFNI CGCG 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 2 cut(s) 236, 492
BspTNI GGTCTC 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 611, 612
BssMI GATC 6 cut(s) 12, 81, 115, 228, 409, 484
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 2 cut(s) 453, 577
Bst6I CTCTTC 2 cut(s) 317, 565
BstAUI TGTACA 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 340, 509
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 6 cut(s) 15, 84, 118, 231, 412, 487
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 6 cut(s) 12, 81, 115, 228, 409, 484
BstMCI CGRYCG 2 cut(s) 84, 118
BstMWI GCNNNNNNNGC 1 cut(s) 586
BstNI CCWGG 1 cut(s) 613
BstNSI RCATGY 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 611
BstSFI CTRYAG 2 cut(s) 6, 200
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 529
BstX2I RGATCY 3 cut(s) 228, 409, 484
BstYI RGATCY 3 cut(s) 228, 409, 484
Bsu15I ATCGAT 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 118
BtsCI GGATG 2 cut(s) 340, 509
BtsIMutI CAGTG 1 cut(s) 582
BtuMI TCGCGA 1 cut(s) 324
ClaI ATCGAT 1 cut(s) 118
Csp6I GTAC 2 cut(s) 249, 592
CviAII CATG 5 cut(s) 234, 316, 468, 478, 680
CviJI RGCY 6 cut(s) 98, 172, 392, 403, 542, 658
CviKI_1 RGCY 6 cut(s) 98, 172, 392, 403, 542, 658
CviQI GTAC 2 cut(s) 249, 592
DdeI CTNAG 1 cut(s) 303
DpnI GATC 6 cut(s) 14, 83, 117, 230, 411, 486
DpnII GATC 6 cut(s) 12, 81, 115, 228, 409, 484
Eam1104I CTCTTC 2 cut(s) 317, 565
EarI CTCTTC 2 cut(s) 317, 565
Eco31I GGTCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 611
EcoT22I ATGCAT 1 cut(s) 246
FaeI CATG 5 cut(s) 237, 319, 471, 481, 683
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 5 cut(s) 233, 315, 467, 477, 679
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 2 cut(s) 347, 496
Fsp4HI GCNGC 1 cut(s) 543
GluI GCNGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 237, 319, 471, 481, 683
HinfI GANTC 1 cut(s) 49
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 2 cut(s) 6, 251
Hpy188I TCNGA 4 cut(s) 30, 81, 354, 363
Hpy188III TCNNGA 2 cut(s) 46, 323
Hpy8I GTNNAC 2 cut(s) 6, 251
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 349, 524
HpyCH4III ACNGT 2 cut(s) 453, 577
HpyCH4V TGCA 5 cut(s) 178, 202, 244, 338, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 586
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 5 cut(s) 237, 319, 471, 481, 683
Kzo9I GATC 6 cut(s) 12, 81, 115, 228, 409, 484
LmnI GCTCC 1 cut(s) 655
LpnPI CCDG 5 cut(s) 124, 329, 524, 598, 625
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 625
MalI GATC 6 cut(s) 14, 83, 117, 230, 411, 486
MboI GATC 6 cut(s) 12, 81, 115, 228, 409, 484
MboII GAAGA 9 cut(s) 14, 103, 304, 404, 419, 479, 519, 552, 650
MflI RGATCY 3 cut(s) 228, 409, 484
MluCI AATT 3 cut(s) 130, 365, 596
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 4 cut(s) 87, 248, 496, 640
Mph1103I ATGCAT 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 4 cut(s) 87, 215, 618, 703
MspR9I CCNGG 1 cut(s) 613
MvaI CCWGG 1 cut(s) 613
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 586
NdeII GATC 6 cut(s) 12, 81, 115, 228, 409, 484
NlaIII CATG 5 cut(s) 237, 319, 471, 481, 683
NmuCI GTSAC 1 cut(s) 625
NruI TCGCGA 1 cut(s) 324
NsiI ATGCAT 1 cut(s) 246
NspI RCATGY 1 cut(s) 471
PasI CCCWGGG 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 544
Ple19I CGATCG 2 cut(s) 84, 118
Psp6I CCWGG 1 cut(s) 611
PspGI CCWGG 1 cut(s) 611
PstI CTGCAG 1 cut(s) 204
PsuI RGATCY 3 cut(s) 228, 409, 484
PvuI CGATCG 2 cut(s) 84, 118
RruI TCGCGA 1 cut(s) 324
RsaI GTAC 2 cut(s) 250, 593
RsaNI GTAC 2 cut(s) 249, 592
SaqAI TTAA 4 cut(s) 87, 215, 618, 703
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 6 cut(s) 12, 81, 115, 228, 409, 484
ScrFI CCNGG 1 cut(s) 613
SetI ASST 8 cut(s) 100, 143, 184, 259, 360, 394, 651, 660
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 2 cut(s) 6, 200
Sse9I AATT 3 cut(s) 130, 365, 596
SspI AATATT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 611
TaaI ACNGT 2 cut(s) 453, 577
TaqI TCGA 5 cut(s) 39, 69, 114, 118, 692
TaqII GACCGA 1 cut(s) 5
TasI AATT 3 cut(s) 130, 365, 596
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 4 cut(s) 87, 215, 618, 703
Tru9I TTAA 4 cut(s) 87, 215, 618, 703
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 204, 257, 304
TspRI CASTG 1 cut(s) 582
XapI RAATTY 2 cut(s) 365, 596
XceI RCATGY 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.