Prupe.1G338000_v2.0.a1

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009126
Physical Location & Seq
Forward (+)
31850249 .. 31853928
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G338000.1

Sequence Viewer

Length: 720 bp
ATGCAGCGAGGGTCCGCTTCGTCGGCTCTGCCTCTGCGAGCGCGCCTCATAGACTTTCTCATCCAATCTGCTCACAAACTCCAAGTTGCTCCGACCGTGAAATATACCGCATTGTCAATTTTTGCTCATAGATTCTACCCTCGTTGTTTGTCCAGATTGGAGGAACAAGGCAATGACGTGGAAAACTGGCTTTTGCAACCCCTGAGAGAGAGCAATTTGCAGTTGTTTGCGCTCGTTTCTCTATGGATTTCAACCAAAATACACACTTCTCCTTGTTTGTCTGTGAAAATATTCAAGTCTTTGGGGGACAACATTATCAAGGAACAACACTACACCATTCGAGATTACTTGGAAGCAGAGGTGGTCTTAATGCAGGTAGTGAATTTTGAGATTGGTATGAACAATAGTGCTTTTGTATACTTTGAGGAGCTTTTACTTCAATTCAAGGAAGTGGCAAAGGTTGGGGAACTTGTGAACTTTGAAGCAGGCATGGACATCATGGATCTGATTTATGAAAAGGAGGAGGCATCCATGCTCTATACTAATCCTCATTCTCTTGCTGCATCAATCTTGGTTGCTTCATATGTCATCACAGTTCCTAAACAGACGTGGGAATTTCCTGTTGTTCCCTGGGTTAAGTTCGTAACAGGTTGCGAAGAAGAGGATATTCTAGAGATAGTCAGAGACATTCTTAAGCATGTATTGGATGTTTCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

240

Amino Acids

27.34

Weight (kDa)

5.19

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 43
AciI CCGC 2 cut(s) 15, 108
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 2 cut(s) 382, 614
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 5 cut(s) 252, 295, 440, 445, 482
AjiI CACGTC 2 cut(s) 178, 609
AjnI CCWGG 1 cut(s) 629
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 1 cut(s) 510
ApeKI GCWGC 2 cut(s) 4, 560
ApoI RAATTY 2 cut(s) 382, 614
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 3 cut(s) 43, 45, 232
AspS9I GGNCC 1 cut(s) 12
AvaII GGWCC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 16, 547
BciT130I CCWGG 1 cut(s) 631
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 2 cut(s) 671, 718
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 2 cut(s) 5, 561
BlsI GCNGC 2 cut(s) 6, 562
Bme1390I CCNGG 1 cut(s) 631
Bme18I GGWCC 1 cut(s) 12
BmgBI CACGTC 2 cut(s) 178, 609
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 631
BmsI GCATC 2 cut(s) 536, 572
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BsaJI CCNNGG 2 cut(s) 629, 630
Bse1I ACTGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 631
BseDI CCNNGG 2 cut(s) 629, 630
BseGI GGATG 3 cut(s) 60, 527, 712
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 191
BsePI GCGCGC 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 440, 536
BseXI GCAGC 2 cut(s) 16, 547
Bsh1236I CGCG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 2 cut(s) 15, 108
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 1 cut(s) 510
BspTI CTTAAG 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 629, 630
BssHII GCGCGC 1 cut(s) 41
BssMI GATC 1 cut(s) 502
BssNAI GTATAC 1 cut(s) 418
Bst1107I GTATAC 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 2 cut(s) 97, 595
Bst6I CTCTTC 1 cut(s) 654
BstAFI CTTAAG 1 cut(s) 692
BstC8I GCNNGC 3 cut(s) 39, 43, 487
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 3 cut(s) 60, 527, 712
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 3 cut(s) 43, 45, 232
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 1 cut(s) 502
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 631
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 629
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 16, 547
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BstZ17I GTATAC 1 cut(s) 418
BtrI CACGTC 2 cut(s) 178, 609
BtsCI GGATG 3 cut(s) 60, 527, 712
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 39, 43, 487
CfoI GCGC 3 cut(s) 43, 45, 232
Cfr13I GGNCC 1 cut(s) 12
CviAII CATG 4 cut(s) 490, 499, 532, 698
CviJI RGCY 3 cut(s) 26, 190, 430
CviKI_1 RGCY 3 cut(s) 26, 190, 430
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 629
FaeI CATG 4 cut(s) 493, 502, 535, 701
FaqI GGGAC 1 cut(s) 320
FatI CATG 4 cut(s) 489, 498, 531, 697
FauNDI CATATG 1 cut(s) 583
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 5, 561
FokI GGATG 2 cut(s) 47, 514
Fsp4HI GCNGC 2 cut(s) 5, 561
FspBI CTAG 2 cut(s) 671, 718
GlaI GCGC 3 cut(s) 42, 44, 231
GluI GCNGC 2 cut(s) 5, 561
HhaI GCGC 3 cut(s) 43, 45, 232
Hin1II CATG 4 cut(s) 493, 502, 535, 701
Hin6I GCGC 3 cut(s) 41, 43, 230
HinP1I GCGC 3 cut(s) 41, 43, 230
HinfI GANTC 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 418, 475
Hpy188I TCNGA 3 cut(s) 93, 507, 683
Hpy188III TCNNGA 3 cut(s) 153, 341, 671
Hpy8I GTNNAC 2 cut(s) 418, 475
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 97, 595
HpyCH4IV ACGT 2 cut(s) 177, 608
HpyCH4V TGCA 5 cut(s) 4, 196, 220, 373, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 2 cut(s) 177, 608
Hsp92II CATG 4 cut(s) 493, 502, 535, 701
HspAI GCGC 3 cut(s) 41, 43, 230
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 2 cut(s) 94, 427
LpnPI CCDG 9 cut(s) 166, 172, 215, 359, 471, 616, 633, 633, 643
Lsp1109I GCAGC 2 cut(s) 16, 547
LweI GCATC 2 cut(s) 536, 572
MaeI CTAG 2 cut(s) 671, 718
MaeII ACGT 2 cut(s) 177, 608
MaeIII GTNAC 1 cut(s) 643
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 2 cut(s) 668, 671
MflI RGATCY 1 cut(s) 502
MluCI AATT 5 cut(s) 117, 214, 382, 440, 614
MmeI TCCRAC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 3 cut(s) 368, 636, 693
MspCI CTTAAG 1 cut(s) 692
MspR9I CCNGG 1 cut(s) 631
MvaI CCWGG 1 cut(s) 631
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeI CATATG 1 cut(s) 583
NdeII GATC 1 cut(s) 502
NlaIII CATG 4 cut(s) 493, 502, 535, 701
NlaIV GGNNCC 1 cut(s) 13
NspI RCATGY 1 cut(s) 701
PasI CCCWGGG 1 cut(s) 630
PauI GCGCGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 6, 562
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 502
PteI GCGCGC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 368, 636, 693
SatI GCNGC 2 cut(s) 5, 561
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 631
SetI ASST 7 cut(s) 180, 363, 378, 432, 462, 611, 652
SfaNI GCATC 2 cut(s) 536, 572
SinI GGWCC 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 5 cut(s) 117, 214, 382, 440, 614
SsiI CCGC 2 cut(s) 15, 108
SspI AATATT 1 cut(s) 291
SspMI CTAG 2 cut(s) 671, 718
StyD4I CCNGG 1 cut(s) 629
TaaI ACNGT 2 cut(s) 97, 595
TaiI ACGT 2 cut(s) 180, 611
TaqI TCGA 1 cut(s) 340
TasI AATT 5 cut(s) 117, 214, 382, 440, 614
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 3 cut(s) 368, 636, 693
Tru9I TTAA 3 cut(s) 368, 636, 693
TseI GCWGC 2 cut(s) 4, 560
TspDTI ATGAA 3 cut(s) 413, 528, 570
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 2 cut(s) 382, 614
XbaI TCTAGA 1 cut(s) 670
XceI RCATGY 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 671, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.