Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009126

Physical Location & Seq

Genomic Coordinates Forward (+)

44331901 .. 44335374

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0270400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

ATGGGTGTAGGGAAGATGTGTTTTCCTTTCCAGATGGTCAAAAAAAGGATATTTGGGAAGTACAGTGTTATTAGCAGTTGTGCTTATAACACTGGGGTCCTCAAACGGATGACGGTGATGCGCGGTCCACTCTTCGGAGGAGGTGGAAACAGCGAAGTATTGAAGAGATCGAGTCAACTGGTACCCGGAGATTTGGTGACCAAGTCCAGCATCCAGGAGTTCGTATTGAGCACCCGGGGTCTGTCCCCTGAAAAGGTGACTGCGATATCTGAACTGGGGCTTGCGAGTCTGCTGGATATTGGGTGCACTACCCAGGTCGGGCATGTGTGGAGGTTGATGGTGCACAACATTGACCTATCAAACCACACCGTGTCCATTCACGGTCACAACTTTCCCGTCAATGCCTTGGAGTTCAGCCGTATAATGGGAGTGCTTGACGAGGGTGCAGAGATCGAGCTGGGGGCTATCACAGACGCGAGAGAATACGGTGTGTTTATGCAGGACTTGTGCGACGGAGAAGGTCGGATACAGGTCTATCTGTTGAAGGAGATTGTCATTAACCGGGCTGATGTAGACGACACGTTCCGTATTGCATTTACAATGCTTGCAATAGCTCTCGTGCTCTGCCCAGGCACGGGAGAGGACGTTGATCCGTCCTTCGTACTCCCGCTTCTGGACACGGGGAAGATTAGGAACAAAATTTGGGCTTCATTCTGTGTGAAAACATTACTGGAAGCTATGACTGCTCAGCGGGAATCTGGTGACGGTGTAATTGGTGGGTGCGTTCTGTTTCTGCAGACCCTTTATTTTGATAAGGTTGGGGATTCCATGTTTCACGTGGATAGGTCTGTCCTGCCAGTCACAGGGTGGGGTGACTTTGAGGTGAGGGAGCTCATTAGCAGGATCAGGTGCCTTGGAGGCTTCAAGAGCCCAATTGTTTTGATGGAAAGGAGTAAGCGTTCGAAGATGGCAACAAAGTGCGATGTGGATGACGGTGAGTTTGGGCTTGGACTAAGGAAGGGGGTTCATGAGGACATTTTTGACATCAAGCTGGACATGATGGGTGTTAAGGGTGACATCAGCAGGCTTACTGGGATTGTCGGAAGGCTGCAGCCGGACATGGCCGAGCTGACAGGGAAAGTGGACATCATAGCACGGGAGTTACGTAGCTGGAAGAAAGAAGCTGCACAGATGGTCTCACAATCTGATGACGGCGAGGCTATGCGGGCTGTGTCAGCCACCTCAAGCAGCCCGGGTGAACCCCCATCAATGCCAATCAGAAGGTCTAAGGCAGTAGGTGCCGGGGCATCCAGGTCCGTCGCATCTCCATATGCACGTGCCCTTTTCACATACGCAGTTCCACAAAACAAGAGATTGGAGTCCGGCTACTATGCTGAATATGCGGCGGGTCCTTACCTTCTACAGAAGGTCGTCTGCGATGAGGACCTCCTACTCATCAACTACATATTCATCGGGGGTAGGAAATGCACAGTTGAGGAAGGAAGAACAATTGTTGCAGCATGCGGGAATAACAGGGCTCTACTGTACCGCGATGAAATCTCCTGCTTGGGACCTGACAAAGATGTGACCAGCTTTGTCATAAATTTCATTGCTGATGGATTGAACACTCGAGAGTCTACGGACTGGTTTTTGCCTACTTACTTCTCGGAGAAGGCAAACACGTATGACGCAAGGGAGTCGTCATTTCGGGATTGGGTTGAGCACACCCGCACACTCTGCAATCTGGACCGGTTCAATGGTCTGTTGGAGAAGTGCAAGAGGATTTTCCTGCCGATGCACGATGAAAAGAATGGGGGACATTGGTTCTTGATGGTTGTTGATATGCATAACAAGCTGCGCCATCTTGACCATTGCTTCTACTTTGAGAAGATGAGGCTGAAAGGTAGCACTGACTTTGGGATGTTCGATCATGTTGTTCCTGACAATGTTCCAACACAGAAAAATGGAGTTGATTGTGGCATCTTCGTAATCCAGAACATGATGCACTTTAAGACCAAGTGGAATGAAGGGGCCACCTCACATCAGCTTCGATGCAACATCCTGCTTTGCTGTCTCAAGTCCCCCGTAAATGAGAGGGCAAAATTTACACTTAGGGAGGCAAGAGGATTTGCTGCTGCTGATGGCTTAAGCAGAAGTTTAAAGGATCCAAATGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

726

Amino Acids

80.75

Weight (kDa)

6.96

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01905
fragaria_vesca	FvH4_4g26110 FvH4_4g26110 FvH4_4g26110
malus_domestica	MD13G1015700.v1.1
prunus_persica	Prupe.1G338000_v2.0.a1
pyrus_communis	pycom13g01330 pycom13g01340
rosa_chinensis	RchiOBHm_Chr4g0433681
rosa_laevigata	RLG00000006739
rosa_roxburghii	Rroxscaffold_5G00375120
rosa_rugosa	Rorug04G0270100 Rorug04G0270200 Rorug04G0270300 Rorug04G0270400 Rorug04G0270500 Rorug04G0270600.1
rosa_samantha	Rh4AG325100 Rh4BG332800 Rh4CG348100 Rh4DG329500
rosa_wichuraiana	Rw4G028150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	3 cut(s)	181, 909, 1298
AccI	GTMKAC	2 cut(s)	573, 1637
AccII	CGCG	3 cut(s)	123, 476, 1551
AciI	CCGC	9 cut(s)	123, 668, 751, 1225, 1403, 1406, 1524, 1549, 1729
AclWI	GGATC	4 cut(s)	644, 911, 2159, 2172
AcoI	YGGCCR	1 cut(s)	1122
AcsI	RAATTY	3 cut(s)	699, 1603, 2102
AcvI	CACGTG	2 cut(s)	838, 1337
AdeI	CACNNNGTG	2 cut(s)	370, 867
AfaI	GTAC	4 cut(s)	62, 183, 663, 1547
AfiI	CCNNNNNNNGG	8 cut(s)	134, 253, 318, 424, 634, 635, 673, 863
AflII	CTTAAG	1 cut(s)	2146
AflIII	ACRYGT	2 cut(s)	579, 1680
AgeI	ACCGGT	1 cut(s)	1749
AgsI	TTSAA	5 cut(s)	163, 544, 925, 1624, 1756
AjnI	CCWGG	4 cut(s)	213, 312, 628, 1310
AloI	GAACNNNNNNTCC	2 cut(s)	943, 975
Alw21I	GWGCWC	6 cut(s)	233, 308, 345, 624, 894, 1725
Alw26I	GTCTC	2 cut(s)	1201, 2078
Alw44I	GTGCAC	2 cut(s)	304, 341
AlwI	GGATC	4 cut(s)	644, 911, 2159, 2172
Ama87I	CYCGRG	3 cut(s)	234, 1252, 1629
AoxI	GGCC	2 cut(s)	1122, 2031
ApaLI	GTGCAC	2 cut(s)	304, 341
ApeKI	GCWGC	8 cut(s)	1108, 1111, 1184, 1248, 1517, 1855, 2132, 2135
ApoI	RAATTY	3 cut(s)	699, 1603, 2102
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
AsiGI	ACCGGT	1 cut(s)	1749
Asp718I	GGTACC	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	123, 1860
AspS9I	GGNCC	8 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747, 2031
AsuC2I	CCSGG	7 cut(s)	186, 235, 236, 563, 1253, 1254, 1303
AsuHPI	GGTGA	9 cut(s)	127, 208, 268, 773, 884, 895, 1007, 1085, 1268
AsuII	TTCGAA	1 cut(s)	962
AvaI	CYCGRG	3 cut(s)	234, 1252, 1629
AvaII	GGWCC	7 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747
BaeGI	GKGCMC	3 cut(s)	308, 345, 1342
BamHI	GGATCC	1 cut(s)	2164
BanI	GGYRCC	3 cut(s)	181, 909, 1298
BanII	GRGCYC	3 cut(s)	894, 932, 1540
BarI	GAAGNNNNNNTAC	4 cut(s)	510, 542, 654, 686
BauI	CACGAG	1 cut(s)	617
BbrPI	CACGTG	2 cut(s)	838, 1337
Bbv12I	GWGCWC	6 cut(s)	233, 308, 345, 624, 894, 1725
BbvI	GCAGC	8 cut(s)	1095, 1123, 1171, 1260, 1529, 1842, 2119, 2122
BceAI	ACGGC	2 cut(s)	402, 1228
BcgI	CGANNNNNNTGC	2 cut(s)	1680, 1714
BciT130I	CCWGG	4 cut(s)	215, 314, 630, 1312
BciVI	GTATCC	1 cut(s)	519
BcnI	CCSGG	7 cut(s)	186, 235, 236, 563, 1253, 1254, 1303
BcoDI	GTCTC	2 cut(s)	1201, 2078
BfmI	CTRYAG	3 cut(s)	794, 1109, 1421
BfrI	CTTAAG	1 cut(s)	2146
BfuI	GTATCC	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	918
BisI	GCNGC	9 cut(s)	1109, 1112, 1185, 1249, 1404, 1518, 1856, 2133, 2136
BlpI	GCTNAGC	1 cut(s)	747
BlsI	GCNGC	9 cut(s)	1110, 1113, 1186, 1250, 1405, 1519, 1857, 2134, 2137
Bme18I	GGWCC	7 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747
BmeT110I	CYCGRG	3 cut(s)	234, 1252, 1629
BmgT120I	GGNCC	8 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747, 2031
BmiI	GGNNCC	8 cut(s)	98, 183, 911, 1300, 1410, 1572, 2032, 2166
BmrI	ACTGGG	3 cut(s)	102, 284, 1101
BmsI	GCATC	8 cut(s)	108, 219, 1316, 1331, 1785, 1989, 1992, 2042
BmuI	ACTGGG	3 cut(s)	102, 284, 1101
Bpu1102I	GCTNAGC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	962
BpuEI	CTTGAG	2 cut(s)	1228, 2060
BpuMI	CCSGG	7 cut(s)	186, 235, 236, 563, 1253, 1254, 1303
BsaAI	YACGTR	4 cut(s)	838, 1166, 1337, 1683
BsaI	GGTCTC	1 cut(s)	1201
BsaJI	CCNNGG	8 cut(s)	234, 235, 312, 405, 628, 913, 1252, 1302
BsaWI	WCCGGW	1 cut(s)	1749
BsaXI	ACNNNNNCTCC	6 cut(s)	180, 210, 630, 660, 943, 973
Bsc4I	CCNNNNNNNGG	8 cut(s)	134, 253, 318, 424, 634, 635, 673, 863
Bse118I	RCCGGY	1 cut(s)	1749
Bse1I	ACTGG	7 cut(s)	97, 183, 279, 735, 857, 1096, 1649
Bse3DI	GCAATG	2 cut(s)	1608, 1870
BseBI	CCWGG	4 cut(s)	215, 314, 630, 1312
BseDI	CCNNGG	8 cut(s)	234, 235, 312, 405, 628, 913, 1252, 1302
BseGI	GGATG	6 cut(s)	114, 210, 994, 1307, 1926, 2058
BseLI	CCNNNNNNNGG	8 cut(s)	134, 253, 318, 424, 634, 635, 673, 863
BseMI	GCAATG	2 cut(s)	1608, 1870
BseMII	CTCAG	1 cut(s)	761
BseNI	ACTGG	7 cut(s)	97, 183, 279, 735, 857, 1096, 1649
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	3 cut(s)	308, 345, 1342
BseXI	GCAGC	8 cut(s)	1095, 1123, 1171, 1260, 1529, 1842, 2119, 2122
BseYI	CCCAGC	1 cut(s)	457
BsgI	GTGCAG	2 cut(s)	465, 1170
Bsh1236I	CGCG	3 cut(s)	123, 476, 1551
BshFI	GGCC	2 cut(s)	1124, 2033
BshNI	GGYRCC	3 cut(s)	181, 909, 1298
BshTI	ACCGGT	1 cut(s)	1749
BsiHKAI	GWGCWC	6 cut(s)	233, 308, 345, 624, 894, 1725
BsiHKCI	CYCGRG	3 cut(s)	234, 1252, 1629
BsiSI	CCGG	8 cut(s)	186, 235, 562, 1115, 1253, 1302, 1383, 1750
BslFI	GGGAC	4 cut(s)	229, 1584, 1830, 2065
BslI	CCNNNNNNNGG	8 cut(s)	134, 253, 318, 424, 634, 635, 673, 863
BsmAI	GTCTC	2 cut(s)	1201, 2078
BsmFI	GGGAC	4 cut(s)	229, 1584, 1830, 2065
BsnI	GGCC	2 cut(s)	1124, 2033
Bso31I	GGTCTC	1 cut(s)	1201
BsoBI	CYCGRG	3 cut(s)	234, 1252, 1629
Bsp119I	TTCGAA	1 cut(s)	962
Bsp1286I	GDGCHC	9 cut(s)	233, 308, 345, 624, 894, 932, 1342, 1540, 1725
Bsp143I	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
Bsp1720I	GCTNAGC	1 cut(s)	747
BspACI	CCGC	9 cut(s)	123, 668, 751, 1225, 1403, 1406, 1524, 1549, 1729
BspANI	GGCC	2 cut(s)	1124, 2033
BspCNI	CTCAG	1 cut(s)	760
BspFNI	CGCG	3 cut(s)	123, 476, 1551
BspHI	TCATGA	1 cut(s)	1027
BspLI	GGNNCC	8 cut(s)	98, 183, 911, 1300, 1410, 1572, 2032, 2166
BspMAI	CTGCAG	2 cut(s)	798, 1113
BspPI	GGATC	4 cut(s)	644, 911, 2159, 2172
BspT104I	TTCGAA	1 cut(s)	962
BspT107I	GGYRCC	3 cut(s)	181, 909, 1298
BspTI	CTTAAG	1 cut(s)	2146
BspTNI	GGTCTC	1 cut(s)	1201
BsrDI	GCAATG	2 cut(s)	1608, 1870
BsrFI	RCCGGY	1 cut(s)	1749
BsrI	ACTGG	7 cut(s)	97, 183, 279, 735, 857, 1096, 1649
BssAI	RCCGGY	1 cut(s)	1749
BssECI	CCNNGG	8 cut(s)	234, 235, 312, 405, 628, 913, 1252, 1302
BssMI	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	2 cut(s)	405, 913
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	4 cut(s)	215, 314, 630, 1312
Bst4CI	ACNGT	9 cut(s)	65, 115, 370, 383, 488, 767, 995, 1492, 1545
Bst6I	CTCTTC	2 cut(s)	137, 158
BstAFI	CTTAAG	1 cut(s)	2146
BstAPI	GCANNNNNTGC	2 cut(s)	1298, 1737
BstBAI	YACGTR	4 cut(s)	838, 1166, 1337, 1683
BstBI	TTCGAA	1 cut(s)	962
BstC8I	GCNNGC	5 cut(s)	282, 606, 1085, 1227, 1522
BstDEI	CTNAG	4 cut(s)	747, 1013, 1287, 2111
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	6 cut(s)	114, 210, 994, 1307, 1926, 2058
BstFNI	CGCG	3 cut(s)	123, 476, 1551
BstHHI	GCGC	2 cut(s)	123, 1860
BstKTI	GATC	6 cut(s)	170, 453, 652, 906, 1930, 2167
BstMAI	GTCTC	2 cut(s)	1201, 2078
BstMBI	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
BstMWI	GCNNNNNNNGC	9 cut(s)	743, 918, 927, 1226, 1235, 1298, 1400, 1737, 1852
BstNI	CCWGG	4 cut(s)	215, 314, 630, 1312
BstNSI	RCATGY	2 cut(s)	326, 1524
BstPI	GGTNACC	1 cut(s)	196
BstSFI	CTRYAG	3 cut(s)	794, 1109, 1421
BstSLI	GKGCMC	3 cut(s)	308, 345, 1342
BstSNI	TACGTA	1 cut(s)	1166
BstUI	CGCG	3 cut(s)	123, 476, 1551
BstV1I	GCAGC	8 cut(s)	1095, 1123, 1171, 1260, 1529, 1842, 2119, 2122
BstX2I	RGATCY	1 cut(s)	2164
BstYI	RGATCY	1 cut(s)	2164
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	1124, 2033
BtgZI	GCGATG	3 cut(s)	996, 1452, 1566
BtsCI	GGATG	6 cut(s)	114, 210, 994, 1307, 1926, 2058
BtsIMutI	CAGTG	3 cut(s)	70, 90, 1908
Cac8I	GCNNGC	5 cut(s)	282, 606, 1085, 1227, 1522
CciI	TCATGA	1 cut(s)	1027
CfoI	GCGC	2 cut(s)	123, 1860
Cfr10I	RCCGGY	1 cut(s)	1749
Cfr13I	GGNCC	8 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747, 2031
Cfr9I	CCCGGG	2 cut(s)	234, 1252
CseI	GACGC	2 cut(s)	482, 1697
Csp6I	GTAC	4 cut(s)	61, 182, 662, 1546
CspAI	ACCGGT	1 cut(s)	1749
CviAII	CATG	8 cut(s)	323, 829, 1028, 1057, 1120, 1521, 1931, 1999
CviQI	GTAC	4 cut(s)	61, 182, 662, 1546
DdeI	CTNAG	4 cut(s)	747, 1013, 1287, 2111
DpnI	GATC	6 cut(s)	169, 452, 651, 905, 1929, 2166
DpnII	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
DraI	TTTAAA	1 cut(s)	2160
DraIII	CACNNNGTG	2 cut(s)	370, 867
EaeI	YGGCCR	1 cut(s)	1122
Eam1104I	CTCTTC	2 cut(s)	137, 158
EarI	CTCTTC	2 cut(s)	137, 158
Ecl136II	GAGCTC	1 cut(s)	892
Eco105I	TACGTA	1 cut(s)	1166
Eco130I	CCWWGG	2 cut(s)	405, 913
Eco24I	GRGCYC	3 cut(s)	894, 932, 1540
Eco31I	GGTCTC	1 cut(s)	1201
Eco32I	GATATC	1 cut(s)	267
Eco47I	GGWCC	7 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747
Eco53kI	GAGCTC	1 cut(s)	892
Eco72I	CACGTG	2 cut(s)	838, 1337
Eco88I	CYCGRG	3 cut(s)	234, 1252, 1629
Eco91I	GGTNACC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	892
EcoO109I	RGGNCCY	4 cut(s)	97, 1409, 1444, 1571
EcoO65I	GGTNACC	1 cut(s)	196
EcoRII	CCWGG	4 cut(s)	213, 312, 628, 1310
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	405, 913
EcoT22I	ATGCAT	1 cut(s)	1848
EcoT38I	GRGCYC	3 cut(s)	894, 932, 1540
ErhI	CCWWGG	2 cut(s)	405, 913
FaeI	CATG	8 cut(s)	326, 832, 1031, 1060, 1123, 1524, 1934, 2002
FaqI	GGGAC	4 cut(s)	229, 1584, 1830, 2065
FatI	CATG	8 cut(s)	322, 828, 1027, 1056, 1119, 1520, 1930, 1998
FauI	CCCGC	6 cut(s)	675, 744, 1218, 1399, 1517, 1736
FauNDI	CATATG	1 cut(s)	1330
FblI	GTMKAC	2 cut(s)	573, 1637
Fnu4HI	GCNGC	9 cut(s)	1109, 1112, 1185, 1249, 1404, 1518, 1856, 2133, 2136
FokI	GGATG	6 cut(s)	121, 197, 1001, 1294, 1933, 2045
FriOI	GRGCYC	3 cut(s)	894, 932, 1540
Fsp4HI	GCNGC	9 cut(s)	1109, 1112, 1185, 1249, 1404, 1518, 1856, 2133, 2136
GlaI	GCGC	2 cut(s)	122, 1859
GluI	GCNGC	9 cut(s)	1109, 1112, 1185, 1249, 1404, 1518, 1856, 2133, 2136
GsaI	CCCAGC	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	1124, 2033
HapII	CCGG	8 cut(s)	186, 235, 562, 1115, 1253, 1302, 1383, 1750
HgaI	GACGC	2 cut(s)	482, 1697
HhaI	GCGC	2 cut(s)	123, 1860
Hin1II	CATG	8 cut(s)	326, 832, 1031, 1060, 1123, 1524, 1934, 2002
Hin6I	GCGC	2 cut(s)	121, 1858
HinP1I	GCGC	2 cut(s)	121, 1858
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HinfI	GANTC	7 cut(s)	172, 286, 755, 824, 1379, 1634, 1697
HpaII	CCGG	8 cut(s)	186, 235, 562, 1115, 1253, 1302, 1383, 1750
HphI	GGTGA	9 cut(s)	127, 208, 268, 773, 884, 895, 1007, 1085, 1268
Hpy166II	GTNNAC	8 cut(s)	128, 176, 306, 343, 574, 1144, 1259, 1638
Hpy188I	TCNGA	7 cut(s)	137, 271, 525, 1103, 1207, 1280, 1669
Hpy8I	GTNNAC	8 cut(s)	128, 176, 306, 343, 574, 1144, 1259, 1638
Hpy99I	CGWCG	2 cut(s)	515, 1322
HpyCH4III	ACNGT	9 cut(s)	65, 115, 370, 383, 488, 767, 995, 1492, 1545
HpyCH4IV	ACGT	6 cut(s)	581, 645, 837, 1165, 1336, 1682
HpyF10VI	GCNNNNNNNGC	9 cut(s)	743, 918, 927, 1226, 1235, 1298, 1400, 1737, 1852
HpyF3I	CTNAG	4 cut(s)	747, 1013, 1287, 2111
HpySE526I	ACGT	6 cut(s)	581, 645, 837, 1165, 1336, 1682
Hsp92II	CATG	8 cut(s)	326, 832, 1031, 1060, 1123, 1524, 1934, 2002
HspAI	GCGC	2 cut(s)	121, 1858
KpnI	GGTACC	1 cut(s)	185
Kzo9I	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
LmnI	GCTCC	1 cut(s)	889
Lsp1109I	GCAGC	8 cut(s)	1095, 1123, 1171, 1260, 1529, 1842, 2119, 2122
LweI	GCATC	8 cut(s)	108, 219, 1316, 1331, 1785, 1989, 1992, 2042
MaeII	ACGT	6 cut(s)	581, 645, 837, 1165, 1336, 1682
MaeIII	GTNAC	9 cut(s)	196, 256, 383, 761, 859, 872, 1073, 1161, 1585
MalI	GATC	6 cut(s)	169, 452, 651, 905, 1929, 2166
MboI	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
MboII	GAAGA	9 cut(s)	25, 124, 175, 697, 976, 1186, 1515, 1900, 1975
MfeI	CAATTG	2 cut(s)	933, 1509
MflI	RGATCY	1 cut(s)	2164
MhlI	GDGCHC	9 cut(s)	233, 308, 345, 624, 894, 932, 1342, 1540, 1725
MluCI	AATT	6 cut(s)	699, 771, 933, 1509, 1603, 2102
MlyI	GAGTC	5 cut(s)	181, 295, 1388, 1643, 1706
MmeI	TCCRAC	4 cut(s)	503, 1081, 1746, 1976
Mph1103I	ATGCAT	1 cut(s)	1848
MseI	TTAA	5 cut(s)	558, 1068, 2010, 2147, 2159
MspA1I	CMGCKG	1 cut(s)	751
MspCI	CTTAAG	1 cut(s)	2146
MspI	CCGG	8 cut(s)	186, 235, 562, 1115, 1253, 1302, 1383, 1750
MunI	CAATTG	2 cut(s)	933, 1509
MvaI	CCWGG	4 cut(s)	215, 314, 630, 1312
MvnI	CGCG	3 cut(s)	123, 476, 1551
MwoI	GCNNNNNNNGC	9 cut(s)	743, 918, 927, 1226, 1235, 1298, 1400, 1737, 1852
NciI	CCSGG	7 cut(s)	186, 235, 236, 563, 1253, 1254, 1303
NdeI	CATATG	1 cut(s)	1330
NdeII	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
NlaIII	CATG	8 cut(s)	326, 832, 1031, 1060, 1123, 1524, 1934, 2002
NlaIV	GGNNCC	8 cut(s)	98, 183, 911, 1300, 1410, 1572, 2032, 2166
NmeAIII	GCCGAG	1 cut(s)	1150
NmuCI	GTSAC	8 cut(s)	196, 256, 383, 761, 859, 872, 1073, 1585
NsiI	ATGCAT	1 cut(s)	1848
NspI	RCATGY	2 cut(s)	326, 1524
NspV	TTCGAA	1 cut(s)	962
PaeI	GCATGC	1 cut(s)	1524
PaeR7I	CTCGAG	1 cut(s)	1629
PagI	TCATGA	1 cut(s)	1027
PcsI	WCGNNNNNNNCGW	1 cut(s)	1162
PfeI	GAWTC	2 cut(s)	755, 824
PflFI	GACNNNGTC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	1749
PkrI	GCNGC	9 cut(s)	1110, 1113, 1186, 1250, 1405, 1519, 1857, 2134, 2137
PleI	GAGTC	5 cut(s)	180, 294, 1387, 1642, 1705
PmaCI	CACGTG	2 cut(s)	838, 1337
PmlI	CACGTG	2 cut(s)	838, 1337
PpsI	GAGTC	5 cut(s)	180, 294, 1387, 1642, 1705
Ppu21I	YACGTR	4 cut(s)	838, 1166, 1337, 1683
PpuMI	RGGWCCY	4 cut(s)	97, 1409, 1444, 1571
PsiI	TTATAA	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	894
Psp5II	RGGWCCY	4 cut(s)	97, 1409, 1444, 1571
Psp6I	CCWGG	4 cut(s)	213, 312, 628, 1310
PspCI	CACGTG	2 cut(s)	838, 1337
PspEI	GGTNACC	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	4 cut(s)	213, 312, 628, 1310
PspN4I	GGNNCC	8 cut(s)	98, 183, 911, 1300, 1410, 1572, 2032, 2166
PspPI	GGNCC	8 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747, 2031
PspPPI	RGGWCCY	4 cut(s)	97, 1409, 1444, 1571
PstI	CTGCAG	2 cut(s)	798, 1113
PsuI	RGATCY	1 cut(s)	2164
PsyI	GACNNNGTC	1 cut(s)	202
RsaI	GTAC	4 cut(s)	62, 183, 663, 1547
RsaNI	GTAC	4 cut(s)	61, 182, 662, 1546
SacI	GAGCTC	1 cut(s)	894
SaqAI	TTAA	5 cut(s)	558, 1068, 2010, 2147, 2159
SatI	GCNGC	9 cut(s)	1109, 1112, 1185, 1249, 1404, 1518, 1856, 2133, 2136
Sau3AI	GATC	6 cut(s)	167, 450, 649, 903, 1927, 2164
Sau96I	GGNCC	8 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747, 2031
SchI	GAGTC	5 cut(s)	181, 295, 1388, 1643, 1706
SduI	GDGCHC	9 cut(s)	233, 308, 345, 624, 894, 932, 1342, 1540, 1725
SfaNI	GCATC	8 cut(s)	108, 219, 1316, 1331, 1785, 1989, 1992, 2042
SfcI	CTRYAG	3 cut(s)	794, 1109, 1421
Sfr274I	CTCGAG	1 cut(s)	1629
SfuI	TTCGAA	1 cut(s)	962
SinI	GGWCC	7 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747
SlaI	CTCGAG	1 cut(s)	1629
SmaI	CCCGGG	2 cut(s)	236, 1254
SmlI	CTYRAG	4 cut(s)	1243, 1629, 2075, 2146
SmoI	CTYRAG	4 cut(s)	1243, 1629, 2075, 2146
SnaBI	TACGTA	1 cut(s)	1166
SphI	GCATGC	1 cut(s)	1524
Sse9I	AATT	6 cut(s)	699, 771, 933, 1509, 1603, 2102
SsiI	CCGC	9 cut(s)	123, 668, 751, 1225, 1403, 1406, 1524, 1549, 1729
SstI	GAGCTC	1 cut(s)	894
StyI	CCWWGG	2 cut(s)	405, 913
TaaI	ACNGT	9 cut(s)	65, 115, 370, 383, 488, 767, 995, 1492, 1545
TaiI	ACGT	6 cut(s)	584, 648, 840, 1168, 1339, 1685
TaqI	TCGA	6 cut(s)	170, 453, 962, 1630, 1926, 2050
TasI	AATT	6 cut(s)	699, 771, 933, 1509, 1603, 2102
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	1406
TfiI	GAWTC	2 cut(s)	755, 824
Tru1I	TTAA	5 cut(s)	558, 1068, 2010, 2147, 2159
Tru9I	TTAA	5 cut(s)	558, 1068, 2010, 2147, 2159
TscAI	CASTG	3 cut(s)	70, 97, 1915
TseFI	GTSAC	8 cut(s)	196, 256, 383, 761, 859, 872, 1073, 1585
TseI	GCWGC	8 cut(s)	1108, 1111, 1184, 1248, 1517, 1855, 2132, 2135
Tsp45I	GTSAC	8 cut(s)	196, 256, 383, 761, 859, 872, 1073, 1585
TspDTI	ATGAA	7 cut(s)	699, 1016, 1459, 1569, 1597, 1818, 2040
TspGWI	ACGGA	6 cut(s)	121, 528, 575, 642, 1306, 1655
TspMI	CCCGGG	2 cut(s)	234, 1252
TspRI	CASTG	3 cut(s)	70, 97, 1915
Tth111I	GACNNNGTC	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	2146
VneI	GTGCAC	2 cut(s)	304, 341
VpaK11BI	GGWCC	7 cut(s)	97, 125, 1314, 1409, 1444, 1571, 1747
XapI	RAATTY	3 cut(s)	699, 1603, 2102
XceI	RCATGY	2 cut(s)	326, 1524
XcmI	CCANNNNNNNNNTGG	2 cut(s)	835, 864
XhoI	CTCGAG	1 cut(s)	1629
XmaI	CCCGGG	2 cut(s)	234, 1252
XmiI	GTMKAC	2 cut(s)	573, 1637
Zsp2I	ATGCAT	1 cut(s)	1848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.