Rroxscaffold_5G00375120

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009126
Physical Location & Seq
Forward (+)
56000870 .. 56004995
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375120.1

Sequence Viewer

Length: 714 bp
ATGCAGAGAGAATCCGGTTCGGCTTTGCCGCTCCGAGCAAGACTCATCGACTTCCTCATCCAATCTGCTCAGCGGCTCCAACTTTCTCCGACCGAGAAGTACACCGCCTTGTCACTCTTCGCCCATAGATTCTACCCGCGTTTTATGTCCCAGTTGGAACAAGGCCATGACATGGGGAACTGGCTCTTGCAACCCTTGAGAGAGAGCAATTTGCAGCTATTTGCGCTTGTTTCGTTATGGATTTCGAACAAAATACACTCTTCTCCTGCATTGTCCGTGAAGATATTCAAGTCCTTGGGAGACAAAAGTATCAGTGAACAACACTTCACCATTCGAGATTATTCTGAAGCGGAGGTGGTCTTAATGCAGGTAGTGAATTTTGAGATTTGTGTGGAAAATGTTGCTTTCGTATACTTTGAAGAGCTTTTACTCCAATTCAAGGGAGTGTCAAAGGTTGGGGAACTAGTGAACTTTGAAGCAGGCATGGACATCATGGATCTACTTTATGAAAAGGAGGAGACAACGATGCTCTATGCTAATCCTCGTTTTCTCGCTGCATCAGTCTTGGCACGTTGCTTCATATTTCTTAAGAATAAAATCTTGGCAACACTGCCTATCCTTCTCTGGTTGAGCTTTGTAACCGGATGCGAAGAAGAGGATGTTGTAGAGATGGTCAGAGAAATTCTTAAGCACTTATTCCCTCTTTCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

237

Amino Acids

27.26

Weight (kDa)

5.45

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 9 - 129 4.4e-07 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 411
AccII CGCG 1 cut(s) 139
AciI CCGC 5 cut(s) 29, 73, 105, 137, 350
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 2 cut(s) 376, 681
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 172, 439
AflII CTTAAG 2 cut(s) 587, 686
AgsI TTSAA 4 cut(s) 289, 419, 439, 476
AhlI ACTAGT 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AluBI AGCT 3 cut(s) 217, 424, 633
AluI AGCT 3 cut(s) 217, 424, 633
Alw26I GTCTC 2 cut(s) 294, 512
AlwI GGATC 1 cut(s) 504
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 214, 554
ApoI RAATTY 2 cut(s) 376, 681
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 319
AsuII TTCGAA 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbvI GCAGC 2 cut(s) 226, 541
BccI CCATC 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 294, 512
BcuI ACTAGT 1 cut(s) 463
BfaI CTAG 1 cut(s) 464
BfrI CTTAAG 2 cut(s) 587, 686
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 4 cut(s) 29, 74, 215, 555
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 4 cut(s) 30, 75, 216, 556
BmiI GGNNCC 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 516, 566, 635
BmuI ACTGGG 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu1102I GCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 2 cut(s) 14, 641
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 439
Bse1I ACTGG 2 cut(s) 151, 185
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 3 cut(s) 57, 650, 664
BseLI CCNNNNNNNGG 2 cut(s) 172, 439
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 151, 185
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 2 cut(s) 226, 541
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 15, 642
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 172, 439
BsmAI GTCTC 2 cut(s) 294, 512
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 245
Bsp143I GATC 1 cut(s) 496
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 5 cut(s) 29, 73, 105, 137, 350
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 504
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 245
BspTI CTTAAG 2 cut(s) 587, 686
BsrBI CCGCTC 1 cut(s) 31
BsrI ACTGG 2 cut(s) 151, 185
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 1 cut(s) 496
BssNAI GTATAC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 294
Bst1107I GTATAC 1 cut(s) 412
Bst6I CTCTTC 4 cut(s) 122, 265, 414, 648
BstAFI CTTAAG 2 cut(s) 587, 686
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 57, 650, 664
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 2 cut(s) 294, 512
BstMBI GATC 1 cut(s) 496
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 226, 541
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BstZ17I GTATAC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 3 cut(s) 57, 650, 664
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 2 cut(s) 319, 608
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 481
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 100
CviAII CATG 4 cut(s) 167, 172, 484, 493
CviJI RGCY 7 cut(s) 23, 76, 165, 184, 217, 424, 633
CviKI_1 RGCY 7 cut(s) 23, 76, 165, 184, 217, 424, 633
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eam1104I CTCTTC 4 cut(s) 122, 265, 414, 648
EarI CTCTTC 4 cut(s) 122, 265, 414, 648
Eco130I CCWWGG 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 4 cut(s) 170, 175, 487, 496
FaqI GGGAC 1 cut(s) 133
FatI CATG 4 cut(s) 166, 171, 483, 492
FauI CCCGC 1 cut(s) 144
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 29, 74, 215, 555
FokI GGATG 3 cut(s) 44, 657, 671
Fsp4HI GCNGC 4 cut(s) 29, 74, 215, 555
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 225
GluI GCNGC 4 cut(s) 29, 74, 215, 555
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 15, 642
HhaI GCGC 1 cut(s) 226
Hin1II CATG 4 cut(s) 170, 175, 487, 496
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 3 cut(s) 11, 42, 129
HpaII CCGG 2 cut(s) 15, 642
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 4 cut(s) 102, 317, 412, 469
Hpy188I TCNGA 4 cut(s) 35, 90, 346, 677
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 4 cut(s) 102, 317, 412, 469
HpyAV CCTTC 1 cut(s) 629
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 6 cut(s) 4, 190, 214, 269, 367, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 4 cut(s) 170, 175, 487, 496
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 496
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 2 cut(s) 36, 81
LpnPI CCDG 8 cut(s) 28, 164, 166, 279, 353, 465, 610, 655
Lsp1109I GCAGC 2 cut(s) 226, 541
LweI GCATC 3 cut(s) 516, 566, 635
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 2 cut(s) 111, 637
MalI GATC 1 cut(s) 498
MbiI CCGCTC 1 cut(s) 31
MboI GATC 1 cut(s) 496
MboII GAAGA 6 cut(s) 109, 252, 292, 431, 662, 665
MflI RGATCY 1 cut(s) 496
MluCI AATT 4 cut(s) 208, 376, 434, 681
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 3 cut(s) 103, 113, 135
MnlI CCTC 6 cut(s) 65, 346, 508, 552, 649, 711
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 3 cut(s) 362, 588, 687
MspA1I CMGCKG 1 cut(s) 73
MspCI CTTAAG 2 cut(s) 587, 686
MspI CCGG 2 cut(s) 15, 642
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 1 cut(s) 496
NlaIII CATG 4 cut(s) 170, 175, 487, 496
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 111
NspV TTCGAA 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 11, 129
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 4 cut(s) 30, 75, 216, 556
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 3 cut(s) 362, 588, 687
SatI GCNGC 4 cut(s) 29, 74, 215, 555
Sau3AI GATC 1 cut(s) 496
SchI GAGTC 1 cut(s) 36
SetI ASST 7 cut(s) 219, 357, 372, 426, 456, 574, 635
SfaNI GCATC 3 cut(s) 516, 566, 635
SfuI TTCGAA 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 196, 587, 686
SmoI CTYRAG 3 cut(s) 196, 587, 686
SpeI ACTAGT 1 cut(s) 463
Sse9I AATT 4 cut(s) 208, 376, 434, 681
SsiI CCGC 5 cut(s) 29, 73, 105, 137, 350
SspMI CTAG 1 cut(s) 464
StyI CCWWGG 1 cut(s) 294
TaiI ACGT 1 cut(s) 574
TaqI TCGA 3 cut(s) 48, 245, 334
TaqII GACCGA 1 cut(s) 107
TasI AATT 4 cut(s) 208, 376, 434, 681
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 31, 76
TfiI GAWTC 2 cut(s) 11, 129
Tru1I TTAA 3 cut(s) 362, 588, 687
Tru9I TTAA 3 cut(s) 362, 588, 687
TscAI CASTG 2 cut(s) 319, 615
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 2 cut(s) 214, 554
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 522, 568
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 319, 615
Van91I CCANNNNNTGG 1 cut(s) 172
Vha464I CTTAAG 2 cut(s) 587, 686
XapI RAATTY 2 cut(s) 376, 681
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.