Rorug04G0270300

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009126
Physical Location & Seq
Forward (+)
44309045 .. 44309736
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0270300.1

Sequence Viewer

Length: 483 bp
ATGGGTGTGTTCACTTATGAAACTGAGTTCACCTCCGTCATCCCACCACCAAGACTCTTCAAGGCCTTTGTTCTTGATGCTGATAACCTTATCCCCAAAATTGCCCCACAGGCTGTGAAGAGTGCCGAAATCGTTGAGGGAGATGGAGGAGTAGGAACCATCAAGAAGATTCACCTCGGTGAAGGCAGCGAATACAGCTATGTGAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTTTACAACTATAGCATTATTGAGGGGGATGCTATCGGAGACAAAGTTGAGAAAATTTCGTACGAGATTAAATTGGTGGCATCTCCAAGTGGAGGTTCCATCATTAAGAGCACCAGCAACTACCATTGCAAAGGTGAGGTTGAGATCAAGGAAGAGCACGTTAAGGCCGGAAAAGAAAAAGCTGCTGGTTTATTCAAGATCATTGAAAACTACCTTTTGGGCAACCCTGATGCTTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

160

Amino Acids

17.48

Weight (kDa)

5.24

Isoelectric Point (pI)

17.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 154 1.2e-22 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 3 cut(s) 61, 436, 446
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 2 cut(s) 198, 422
AluI AGCT 2 cut(s) 198, 422
Alw21I GWGCWC 2 cut(s) 353, 399
Alw26I GTCTC 1 cut(s) 273
AoxI GGCC 2 cut(s) 63, 405
ApeKI GCWGC 2 cut(s) 186, 422
ApoI RAATTY 1 cut(s) 294
AsuHPI GGTGA 4 cut(s) 22, 164, 191, 386
Bbv12I GWGCWC 2 cut(s) 353, 399
BbvI GCAGC 2 cut(s) 198, 409
BccI CCATC 4 cut(s) 137, 167, 212, 347
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 2 cut(s) 187, 423
BlsI GCNGC 2 cut(s) 188, 424
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 5 cut(s) 67, 217, 259, 329, 460
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 39, 274
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 198, 409
BshFI GGCC 2 cut(s) 65, 407
BsiHKAI GWGCWC 2 cut(s) 353, 399
BsiSI CCGG 1 cut(s) 408
BsiWI CGTACG 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 2 cut(s) 65, 407
Bsp1286I GDGCHC 2 cut(s) 353, 399
Bsp143I GATC 2 cut(s) 384, 438
BspANI GGCC 2 cut(s) 65, 407
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 157, 337
BspQI GCTCTTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 384, 438
Bst6I CTCTTC 3 cut(s) 62, 113, 387
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 39, 274
BstKTI GATC 2 cut(s) 387, 441
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 384, 438
BstMWI GCNNNNNNNGC 2 cut(s) 110, 195
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 198, 409
BsuRI GGCC 2 cut(s) 65, 407
BtsCI GGATG 2 cut(s) 39, 274
Csp6I GTAC 1 cut(s) 301
CviJI RGCY 5 cut(s) 65, 113, 198, 407, 422
CviKI_1 RGCY 5 cut(s) 65, 113, 198, 407, 422
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 386, 440
DpnII GATC 2 cut(s) 384, 438
Eam1104I CTCTTC 3 cut(s) 62, 113, 387
EarI CTCTTC 3 cut(s) 62, 113, 387
Eco147I AGGCCT 1 cut(s) 65
FaiI YATR 3 cut(s) 18, 201, 252
Fnu4HI GCNGC 2 cut(s) 187, 423
FokI GGATG 2 cut(s) 26, 281
Fsp4HI GCNGC 2 cut(s) 187, 423
GluI GCNGC 2 cut(s) 187, 423
HaeIII GGCC 2 cut(s) 65, 407
HapII CCGG 1 cut(s) 408
HinfI GANTC 2 cut(s) 54, 169
HpaII CCGG 1 cut(s) 408
HphI GGTGA 4 cut(s) 22, 164, 191, 386
Hpy166II GTNNAC 3 cut(s) 12, 30, 244
Hpy188I TCNGA 2 cut(s) 213, 278
Hpy188III TCNNGA 3 cut(s) 74, 163, 436
Hpy8I GTNNAC 3 cut(s) 12, 30, 244
HpyAV CCTTC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 195
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 399
Kzo9I GATC 2 cut(s) 384, 438
LguI GCTCTTC 1 cut(s) 387
LpnPI CCDG 4 cut(s) 95, 367, 411, 421
Lsp1109I GCAGC 2 cut(s) 198, 409
LweI GCATC 5 cut(s) 67, 217, 259, 329, 460
MaeII ACGT 1 cut(s) 399
MalI GATC 2 cut(s) 386, 440
MboI GATC 2 cut(s) 384, 438
MboII GAAGA 4 cut(s) 49, 130, 178, 404
MhlI GDGCHC 2 cut(s) 353, 399
MluCI AATT 3 cut(s) 99, 294, 311
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 7 cut(s) 43, 130, 140, 185, 256, 326, 370
MseI TTAA 3 cut(s) 309, 345, 402
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 110, 195
NdeII GATC 2 cut(s) 384, 438
NlaIV GGNNCC 2 cut(s) 157, 337
OliI CACNNNNGTG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 169
Pfl23II CGTACG 1 cut(s) 300
PkrI GCNGC 2 cut(s) 188, 424
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 157, 337
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 309, 345, 402
SatI GCNGC 2 cut(s) 187, 423
Sau3AI GATC 2 cut(s) 384, 438
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 2 cut(s) 353, 399
SfaNI GCATC 5 cut(s) 67, 217, 259, 329, 460
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 3 cut(s) 99, 294, 311
SseBI AGGCCT 1 cut(s) 65
StuI AGGCCT 1 cut(s) 65
TaiI ACGT 1 cut(s) 402
TasI AATT 3 cut(s) 99, 294, 311
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 309, 345, 402
Tru9I TTAA 3 cut(s) 309, 345, 402
TseI GCWGC 2 cut(s) 186, 422
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 25
XapI RAATTY 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.