MD13G1015700.v1.1

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0009126
Physical Location & Seq
Reverse (-)
1000278 .. 1002138
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1015700.v1.1.491

Sequence Viewer

Length: 720 bp
ATGCAGAGTGAGTTCGCTGCGGCGGCGCTGCCTCTGCGAGCGCGCCTCCTTCACTTGCTCATCGAATCTGCTCAACAACTCCAAGTCGCTCCGATAGTGAAATACACCGCATTGTCCCTCTTCGCTCATCGATTTTATCCTCGATGTTTGTCCCGGTTGGAGGAACGGGCAAATGATGTAGCAAACTGGCTTTTGTATCCCTTGAGAGAAAGCAATTTGCAGCTGTTTGCGCTTGTTTCGCTGTGGATTTCAACGAAAATACACACTTCTCCGCATTTGTCTGTGAAGATATTCAAGTCTTTGGGGGACAGCATCATCAAGGAGCAACACTACACCGTTCGAGATTACTTGGAAGCGGAGGTGGTTTTAATGCAGGAAGTGAATTTTGAGATTGGCATGAACAATATTGCTTTTGTACACTTTGAAGAGCTTCTGCTCCAATTCAAGGGAGTCGCAAAAGTTGGGGAACTTGTGAACTTTGAAGCAGGCATGGACATCATGGATCTTCTTTACGAAAAGGAGGAGACATCGATGCTCTACACCAATCCTCGCTCTCTCGCTGCATCGGTCTTGGTTGCTTCATATATCATCACCGTACCTAAACAGATGTTGGAATTTCCTGTTCTTCCTTGGGTTAAGTTTGTAACAGGATGCGATGAAGAGTTTATTCTTGATACTGTCACAGGCATTCTTAAGCACGTTTTCGACGCTTCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

240

Amino Acids

27.29

Weight (kDa)

5.52

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 12 - 131 1e-05 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 43
AciI CCGC 5 cut(s) 20, 23, 108, 272, 356
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 2 cut(s) 382, 614
AfaI GTAC 2 cut(s) 417, 597
AfiI CCNNNNNNNGG 2 cut(s) 160, 445
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 5 cut(s) 252, 295, 425, 445, 482
AluBI AGCT 2 cut(s) 223, 430
AluI AGCT 2 cut(s) 223, 430
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 1 cut(s) 510
ApeKI GCWGC 4 cut(s) 17, 28, 220, 560
ApoI RAATTY 2 cut(s) 382, 614
Asp700I GAANNNNTTC 2 cut(s) 290, 429
AspLEI GCGC 4 cut(s) 28, 43, 45, 232
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 583
BbvI GCAGC 4 cut(s) 4, 15, 232, 547
BciVI GTATCC 1 cut(s) 207
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 29
BfrI CTTAAG 1 cut(s) 692
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 6 cut(s) 18, 21, 24, 29, 221, 561
BlsI GCNGC 6 cut(s) 19, 22, 25, 30, 222, 562
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 4 cut(s) 321, 522, 572, 641
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 154
Bsa29I ATCGAT 2 cut(s) 130, 530
BsaJI CCNNGG 1 cut(s) 629
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 445
Bse1I ACTGG 1 cut(s) 191
BseCI ATCGAT 2 cut(s) 130, 530
BseDI CCNNGG 1 cut(s) 629
BseGI GGATG 1 cut(s) 656
BseLI CCNNNNNNNGG 2 cut(s) 160, 445
BseNI ACTGG 1 cut(s) 191
BsePI GCGCGC 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 4 cut(s) 4, 15, 232, 547
Bsh1236I CGCG 1 cut(s) 43
BshVI ATCGAT 2 cut(s) 130, 530
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 3 cut(s) 100, 136, 320
BslI CCNNNNNNNGG 2 cut(s) 160, 445
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 3 cut(s) 100, 136, 320
BsmI GAATGC 1 cut(s) 687
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 5 cut(s) 20, 23, 108, 272, 356
BspDI ATCGAT 2 cut(s) 130, 530
BspFNI CGCG 1 cut(s) 43
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 420
BspTI CTTAAG 1 cut(s) 692
BsrGI TGTACA 1 cut(s) 415
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 629
BssHII GCGCGC 1 cut(s) 41
BssMI GATC 1 cut(s) 502
BssT1I CCWWGG 1 cut(s) 629
Bst4CI ACNGT 3 cut(s) 337, 595, 679
Bst6I CTCTTC 3 cut(s) 125, 420, 654
BstAFI CTTAAG 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 415
BstC8I GCNNGC 3 cut(s) 39, 43, 487
BstF5I GGATG 1 cut(s) 656
BstFNI CGCG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 4 cut(s) 28, 43, 45, 232
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 4 cut(s) 23, 34, 229, 238
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 4 cut(s) 4, 15, 232, 547
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
Bsu15I ATCGAT 2 cut(s) 130, 530
BsuI GTATCC 1 cut(s) 207
BsuTUI ATCGAT 2 cut(s) 130, 530
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 1 cut(s) 656
Cac8I GCNNGC 3 cut(s) 39, 43, 487
CfoI GCGC 4 cut(s) 28, 43, 45, 232
ClaI ATCGAT 2 cut(s) 130, 530
Csp6I GTAC 2 cut(s) 416, 596
CviAII CATG 3 cut(s) 397, 490, 499
CviJI RGCY 3 cut(s) 190, 223, 430
CviKI_1 RGCY 3 cut(s) 190, 223, 430
CviQI GTAC 2 cut(s) 416, 596
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
Eam1104I CTCTTC 3 cut(s) 125, 420, 654
EarI CTCTTC 3 cut(s) 125, 420, 654
Eco130I CCWWGG 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 629
FaeI CATG 3 cut(s) 400, 493, 502
FaiI YATR 5 cut(s) 398, 491, 500, 583, 585
FaqI GGGAC 3 cut(s) 100, 136, 320
FatI CATG 3 cut(s) 396, 489, 498
Fnu4HI GCNGC 6 cut(s) 18, 21, 24, 29, 221, 561
FokI GGATG 1 cut(s) 663
Fsp4HI GCNGC 6 cut(s) 18, 21, 24, 29, 221, 561
FspBI CTAG 1 cut(s) 718
GlaI GCGC 4 cut(s) 27, 42, 44, 231
GluI GCNGC 6 cut(s) 18, 21, 24, 29, 221, 561
HaeII RGCGCY 1 cut(s) 29
HapII CCGG 1 cut(s) 154
HhaI GCGC 4 cut(s) 28, 43, 45, 232
Hin1II CATG 3 cut(s) 400, 493, 502
Hin6I GCGC 4 cut(s) 26, 41, 43, 230
HinP1I GCGC 4 cut(s) 26, 41, 43, 230
HinfI GANTC 2 cut(s) 65, 450
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 418, 475
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 341, 671
Hpy8I GTNNAC 2 cut(s) 418, 475
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 337, 595, 679
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 4 cut(s) 4, 220, 373, 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 34, 229, 238
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 3 cut(s) 400, 493, 502
HspAI GCGC 4 cut(s) 26, 41, 43, 230
Kzo9I GATC 1 cut(s) 502
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 3 cut(s) 94, 322, 441
LpnPI CCDG 7 cut(s) 167, 172, 359, 471, 633, 633, 669
Lsp1109I GCAGC 4 cut(s) 4, 15, 232, 547
LweI GCATC 4 cut(s) 321, 522, 572, 641
MaeI CTAG 1 cut(s) 718
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 2 cut(s) 643, 679
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 6 cut(s) 112, 298, 437, 497, 617, 671
MflI RGATCY 1 cut(s) 502
MluCI AATT 4 cut(s) 214, 382, 440, 614
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 2 cut(s) 138, 591
MnlI CCTC 8 cut(s) 42, 56, 128, 150, 154, 352, 514, 558
MroXI GAANNNNTTC 2 cut(s) 290, 429
MseI TTAA 3 cut(s) 368, 636, 693
MspA1I CMGCKG 1 cut(s) 223
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 687
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 4 cut(s) 23, 34, 229, 238
NciI CCSGG 1 cut(s) 154
NdeII GATC 1 cut(s) 502
NlaIII CATG 3 cut(s) 400, 493, 502
NmuCI GTSAC 1 cut(s) 679
PauI GCGCGC 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 420
PctI GAATGC 1 cut(s) 687
PdmI GAANNNNTTC 2 cut(s) 290, 429
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 6 cut(s) 19, 22, 25, 30, 222, 562
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 502
PteI GCGCGC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 2 cut(s) 417, 597
RsaNI GTAC 2 cut(s) 416, 596
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 3 cut(s) 368, 636, 693
SatI GCNGC 6 cut(s) 18, 21, 24, 29, 221, 561
Sau3AI GATC 1 cut(s) 502
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 1 cut(s) 154
SetI ASST 5 cut(s) 225, 363, 432, 601, 702
SfaNI GCATC 4 cut(s) 321, 522, 572, 641
SmlI CTYRAG 2 cut(s) 202, 692
SmoI CTYRAG 2 cut(s) 202, 692
Sse9I AATT 4 cut(s) 214, 382, 440, 614
SsiI CCGC 5 cut(s) 20, 23, 108, 272, 356
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 718
StyD4I CCNGG 1 cut(s) 152
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 3 cut(s) 337, 595, 679
TaiI ACGT 1 cut(s) 702
TaqI TCGA 6 cut(s) 63, 130, 142, 340, 530, 705
TaqII GACCGA 1 cut(s) 556
TasI AATT 4 cut(s) 214, 382, 440, 614
TatI WGTACW 1 cut(s) 415
TauI GCSGC 2 cut(s) 23, 26
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 368, 636, 693
Tru9I TTAA 3 cut(s) 368, 636, 693
TseFI GTSAC 1 cut(s) 679
TseI GCWGC 4 cut(s) 17, 28, 220, 560
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 3 cut(s) 413, 570, 672
Vha464I CTTAAG 1 cut(s) 692
XapI RAATTY 2 cut(s) 382, 614
XmnI GAANNNNTTC 2 cut(s) 290, 429
XspI CTAG 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.