Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009126

Physical Location & Seq

Genomic Coordinates Reverse (-)

862405 .. 863304

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01340.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCAGAGGGAGTTCGCTGCGGCGGCGCTGCCTCTGCGAGCGCGCCTCCTTCACTTGCTCATCGAATCTGCCCAACAACTCCAACTCGCTCCGATAGTGAAATACACCGCACTGTCCCTCTTCGCTCATCGATTCTACCCTCGATGTTTATCCCGGTTGGAGGAACGGGCAAATGATGTGGCAAACTGGCTTTTGTATCCCTTGAGAGAAAGCAATTTGCAGCTGTTTGCGCTTGTTTCGCTGTGGATTTCAACGAAAGTAGGTTTTCGATCTTTTTTCTCTGCAAATTTTCTTGGACTTTTCATCCTAATCTATTTGTCTGTGAAGATATTCAAGTCTTTGGGGGACAGCATCATCAAGGAGCAACACTACACCGTTCGAGATTACTTGGAAGCGGAGGTGGTTTTAATGCAGGAAGTGAATTTTGAGATTGGCATCAACAATATTGCTTTTGCACACTTCGAAGAGCTTCTGCTCCAATTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

163

Amino Acids

18.83

Weight (kDa)

7.89

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01905
fragaria_vesca	FvH4_4g26110 FvH4_4g26110 FvH4_4g26110
malus_domestica	MD13G1015700.v1.1
prunus_persica	Prupe.1G338000_v2.0.a1
pyrus_communis	pycom13g01330 pycom13g01340
rosa_chinensis	RchiOBHm_Chr4g0433681
rosa_laevigata	RLG00000006739
rosa_roxburghii	Rroxscaffold_5G00375120
rosa_rugosa	Rorug04G0270100 Rorug04G0270200 Rorug04G0270300 Rorug04G0270400 Rorug04G0270500 Rorug04G0270600.1
rosa_samantha	Rh4AG325100 Rh4BG332800 Rh4CG348100 Rh4DG329500
rosa_wichuraiana	Rw4G028150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	43
AciI	CCGC	4 cut(s)	20, 23, 108, 395
AcsI	RAATTY	2 cut(s)	286, 421
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	252, 334
AluBI	AGCT	2 cut(s)	223, 469
AluI	AGCT	2 cut(s)	223, 469
ApeKI	GCWGC	3 cut(s)	17, 28, 220
ApoI	RAATTY	2 cut(s)	286, 421
Asp700I	GAANNNNTTC	2 cut(s)	329, 468
AspLEI	GCGC	4 cut(s)	28, 43, 45, 232
AsuC2I	CCSGG	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	4, 15, 232
BciVI	GTATCC	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	207
BisI	GCNGC	5 cut(s)	18, 21, 24, 29, 221
BlsI	GCNGC	5 cut(s)	19, 22, 25, 30, 222
Bme1390I	CCNGG	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	2 cut(s)	360, 444
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
Bpu14I	TTCGAA	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	130
BsaBI	GATNNNNATC	2 cut(s)	148, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	191
Bse8I	GATNNNNATC	2 cut(s)	148, 434
BseCI	ATCGAT	1 cut(s)	130
BseGI	GGATG	1 cut(s)	303
BseJI	GATNNNNATC	2 cut(s)	148, 434
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	191
BsePI	GCGCGC	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	4, 15, 232
Bsh1236I	CGCG	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	100, 359
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	100, 359
Bsp119I	TTCGAA	1 cut(s)	462
Bsp143I	GATC	1 cut(s)	269
BspACI	CCGC	4 cut(s)	20, 23, 108, 395
BspDI	ATCGAT	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	191
BssHII	GCGCGC	1 cut(s)	41
BssMI	GATC	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	114, 376
Bst6I	CTCTTC	2 cut(s)	125, 459
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	39, 43
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	4 cut(s)	28, 43, 45, 232
BstKTI	GATC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 34, 229, 238
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	4, 15, 232
Bsu15I	ATCGAT	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	39, 43
CfoI	GCGC	4 cut(s)	28, 43, 45, 232
ClaI	ATCGAT	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviJI	RGCY	3 cut(s)	190, 223, 469
CviKI_1	RGCY	3 cut(s)	190, 223, 469
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
Eam1104I	CTCTTC	2 cut(s)	125, 459
EarI	CTCTTC	2 cut(s)	125, 459
FaqI	GGGAC	2 cut(s)	100, 359
Fnu4HI	GCNGC	5 cut(s)	18, 21, 24, 29, 221
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	5 cut(s)	18, 21, 24, 29, 221
GlaI	GCGC	4 cut(s)	27, 42, 44, 231
GluI	GCNGC	5 cut(s)	18, 21, 24, 29, 221
HaeII	RGCGCY	1 cut(s)	29
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	4 cut(s)	28, 43, 45, 232
Hin6I	GCGC	4 cut(s)	26, 41, 43, 230
HinP1I	GCGC	4 cut(s)	26, 41, 43, 230
HinfI	GANTC	2 cut(s)	65, 132
HpaII	CCGG	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	380
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	114, 376
HpyCH4V	TGCA	5 cut(s)	4, 220, 284, 412, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 34, 229, 238
HspAI	GCGC	4 cut(s)	26, 41, 43, 230
Kzo9I	GATC	1 cut(s)	269
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	3 cut(s)	94, 361, 480
LpnPI	CCDG	3 cut(s)	167, 172, 398
Lsp1109I	GCAGC	3 cut(s)	4, 15, 232
LweI	GCATC	2 cut(s)	360, 444
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	3 cut(s)	112, 337, 476
MluCI	AATT	4 cut(s)	214, 286, 421, 479
MmeI	TCCRAC	2 cut(s)	106, 138
MnlI	CCTC	6 cut(s)	42, 56, 128, 150, 154, 391
MroXI	GAANNNNTTC	2 cut(s)	329, 468
MseI	TTAA	2 cut(s)	407, 483
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	23, 34, 229, 238
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	462
PauI	GCGCGC	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	459
PdmI	GAANNNNTTC	2 cut(s)	329, 468
PfeI	GAWTC	2 cut(s)	65, 132
PkrI	GCNGC	5 cut(s)	19, 22, 25, 30, 222
PteI	GCGCGC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	407, 483
SatI	GCNGC	5 cut(s)	18, 21, 24, 29, 221
Sau3AI	GATC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	4 cut(s)	225, 265, 402, 471
SfaNI	GCATC	2 cut(s)	360, 444
SfuI	TTCGAA	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	4 cut(s)	214, 286, 421, 479
SsiI	CCGC	4 cut(s)	20, 23, 108, 395
SspI	AATATT	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	114, 376
TaqI	TCGA	6 cut(s)	63, 130, 142, 268, 379, 462
TasI	AATT	4 cut(s)	214, 286, 421, 479
TauI	GCSGC	2 cut(s)	23, 26
TfiI	GAWTC	2 cut(s)	65, 132
Tru1I	TTAA	2 cut(s)	407, 483
Tru9I	TTAA	2 cut(s)	407, 483
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	3 cut(s)	17, 28, 220
TspDTI	ATGAA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	286, 421
XmnI	GAANNNNTTC	2 cut(s)	329, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.