FvH4_4g26110

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009126
Physical Location & Seq
Forward (+)
27651297 .. 27654866
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26110.t1

Sequence Viewer

Length: 636 bp
ATGCAGAGACAAGACGCTTCGGCTCTGCCGTTCCGATCAAGACTCATCGACTTCCTAATCCAATCCGCCGAGCGGCTCCAACTTTCTCCGACCGAGAAGTACACCGCCTTGTCAATCTTCGCTCATAGATTCTACCCGCGTTTCATATCCAAGTTGGAACAGGGGAATGACATGGGAAGCTGGCTCTTGCAGCCCTTGAGAGAGAGCAATCTGCAGCTATTTGCCCTTGTTTCGCTATGGATTTCAAACAAAATACACTCTTCTCCTGCATTGTCAGTGAAGATATTCAAGTCATTGGGAGATAAAAGTATCAATGAGCAACACTTTACCATTCGAGATTATTCTGAGGCGGAGAGGGTGTTAATGCAGGTAGTGAATTTTGAGATCTGTGTCGAAAATGTTGCTTTCGTATACTTTGAAGAGCTTTTATTTCAATTCAAGGGAGTGGCAAAGATTGGGGTACTAGTGAACTTTGAAGCAGGCATGGACATCATGGATCTACTTTATGAAAAGGAGGAGACAACAATGCTATATGCTAATCCTCGTTTTCTCGCTGCATCAGTCTTGGCATGTTGCTTCATATGTCACTACAGTTCCCAAACAGAAGTTGGAATTCCCGGTTCTTCCCTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

212

Amino Acids

24.05

Weight (kDa)

5.61

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 2 - 129 2.6e-08 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 411
AccII CGCG 1 cut(s) 139
AciI CCGC 5 cut(s) 66, 73, 105, 137, 350
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 2 cut(s) 376, 612
AfaI GTAC 2 cut(s) 101, 462
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 6 cut(s) 246, 289, 419, 434, 439, 476
AhlI ACTAGT 1 cut(s) 463
AjnI CCWGG 1 cut(s) 627
AluBI AGCT 3 cut(s) 180, 217, 424
AluI AGCT 3 cut(s) 180, 217, 424
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 1 cut(s) 504
ApeKI GCWGC 3 cut(s) 190, 214, 554
ApoI RAATTY 2 cut(s) 376, 612
Asp700I GAANNNNTTC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 618
BbvI GCAGC 3 cut(s) 202, 226, 541
BceAI ACGGC 1 cut(s) 13
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 512
BcuI ACTAGT 1 cut(s) 463
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 2 cut(s) 212, 589
BfuAI ACCTGC 1 cut(s) 358
BglII AGATCT 1 cut(s) 384
BisI GCNGC 4 cut(s) 74, 191, 215, 555
BlsI GCNGC 4 cut(s) 75, 192, 216, 556
Bme1390I CCNGG 2 cut(s) 618, 629
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 2 cut(s) 618, 629
BmsI GCATC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 627, 628
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 627, 628
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 3 cut(s) 202, 226, 541
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 512
Bsp143I GATC 3 cut(s) 35, 384, 496
BspACI CCGC 5 cut(s) 66, 73, 105, 137, 350
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 77
BspMAI CTGCAG 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 504
BspQI GCTCTTC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 627, 628
BssMI GATC 3 cut(s) 35, 384, 496
BssNAI GTATAC 1 cut(s) 412
Bst1107I GTATAC 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 2 cut(s) 265, 414
BstC8I GCNNGC 2 cut(s) 182, 481
BstDEI CTNAG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 3 cut(s) 38, 387, 499
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 3 cut(s) 35, 384, 496
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 629
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 2 cut(s) 616, 627
BstSFI CTRYAG 2 cut(s) 212, 589
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 202, 226, 541
BstX2I RGATCY 2 cut(s) 384, 496
BstYI RGATCY 2 cut(s) 384, 496
BstZ17I GTATAC 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 182, 481
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 100, 461
CviAII CATG 4 cut(s) 172, 484, 493, 570
CviJI RGCY 7 cut(s) 23, 76, 180, 184, 193, 217, 424
CviKI_1 RGCY 7 cut(s) 23, 76, 180, 184, 193, 217, 424
CviQI GTAC 2 cut(s) 100, 461
DdeI CTNAG 1 cut(s) 345
DpnI GATC 3 cut(s) 37, 386, 498
DpnII GATC 3 cut(s) 35, 384, 496
Eam1104I CTCTTC 2 cut(s) 265, 414
EarI CTCTTC 2 cut(s) 265, 414
EciI GGCGGA 2 cut(s) 55, 365
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 627
FaeI CATG 4 cut(s) 175, 487, 496, 573
FatI CATG 4 cut(s) 171, 483, 492, 569
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 1 cut(s) 581
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 74, 191, 215, 555
Fsp4HI GCNGC 4 cut(s) 74, 191, 215, 555
FspBI CTAG 1 cut(s) 464
GluI GCNGC 4 cut(s) 74, 191, 215, 555
HapII CCGG 1 cut(s) 618
HgaI GACGC 1 cut(s) 23
Hin1II CATG 4 cut(s) 175, 487, 496, 573
HinfI GANTC 2 cut(s) 42, 129
HpaII CCGG 1 cut(s) 618
Hpy166II GTNNAC 3 cut(s) 102, 412, 469
Hpy188I TCNGA 3 cut(s) 35, 90, 346
Hpy188III TCNNGA 2 cut(s) 39, 335
Hpy8I GTNNAC 3 cut(s) 102, 412, 469
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4V TGCA 6 cut(s) 4, 190, 214, 269, 367, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 4 cut(s) 175, 487, 496, 573
Kzo9I GATC 3 cut(s) 35, 384, 496
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 7 cut(s) 146, 166, 279, 353, 465, 614, 631
Lsp1109I GCAGC 3 cut(s) 202, 226, 541
LweI GCATC 1 cut(s) 566
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 584
MalI GATC 3 cut(s) 37, 386, 498
MbiI CCGCTC 1 cut(s) 73
MboI GATC 3 cut(s) 35, 384, 496
MboII GAAGA 5 cut(s) 109, 252, 292, 431, 615
MflI RGATCY 2 cut(s) 384, 496
MluCI AATT 3 cut(s) 376, 434, 612
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 4 cut(s) 103, 113, 135, 589
MnlI CCTC 4 cut(s) 340, 348, 508, 552
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 2 cut(s) 362, 634
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 2 cut(s) 618, 629
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 618
NdeI CATATG 1 cut(s) 581
NdeII GATC 3 cut(s) 35, 384, 496
NlaIII CATG 4 cut(s) 175, 487, 496, 573
NlaIV GGNNCC 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 584
NspI RCATGY 1 cut(s) 573
PasI CCCWGGG 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 4 cut(s) 75, 192, 216, 556
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 216
PsuI RGATCY 2 cut(s) 384, 496
RsaI GTAC 2 cut(s) 101, 462
RsaNI GTAC 2 cut(s) 100, 461
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 2 cut(s) 362, 634
SatI GCNGC 4 cut(s) 74, 191, 215, 555
Sau3AI GATC 3 cut(s) 35, 384, 496
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 618, 629
SetI ASST 4 cut(s) 182, 219, 372, 426
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 2 cut(s) 212, 589
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 463
Sse9I AATT 3 cut(s) 376, 434, 612
SsiI CCGC 5 cut(s) 66, 73, 105, 137, 350
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 2 cut(s) 616, 627
TaaI ACNGT 1 cut(s) 593
TaqI TCGA 3 cut(s) 48, 334, 393
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 376, 434, 612
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 2 cut(s) 362, 634
Tru9I TTAA 2 cut(s) 362, 634
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 3 cut(s) 190, 214, 554
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 3 cut(s) 133, 522, 568
TspRI CASTG 1 cut(s) 282
XapI RAATTY 2 cut(s) 376, 612
XceI RCATGY 1 cut(s) 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.