Rh4AG325100

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009126
Physical Location & Seq
Forward (+)
63701104 .. 63705464
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG325100.1

Sequence Viewer

Length: 576 bp
ATGCAGAGAGAATCCGGTTCGGCTTTGCCGCTCCGAGCAAGACTCATCGACTTCCTCATCCAATCTGCTCAGCGGCTCCAACTTTCTCCGACCGAGAAGTACACCGCCTTGTCACTCTTCGCTCGTAGATTCTACCCGCGTTTTATGTCCCAGTTGGAACAAGGCAATGACATGGGGAACTGGCTCTTGCAACCCTTGAGAGAGAGCAATTTGCAGCTATTTGCGCTTGTTTCGCTATGGATTTCCAACAAAATACACTCTTCTCCTGCATTGTCCGTGAAGATATTCAAGTCCTTGGGAGACAAATGTATCAGTGAACAACACTTCACCATTCGAGATTATTCTGAAGCGGAGCTGGTCTTAATGCAGGTAGTGAATTTTGAGATTTGTGTGGAAAATGTTGCTTTCGTATACTTTGAAGAGCTTTTACTCCAATTCAAGGGAGTGTCCAAGGCTGGGGAACTAGTGAACTTTGAAGCAGGCATGGACATCATGGATCTACTTTATGAAAAGGAGGAGACAACGATGCTCTATGCTAATCCTCGTTTTCTCGCTGCATCAGTCTTGGCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

191

Amino Acids

21.93

Weight (kDa)

5.5

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 8 - 129 1e-07 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 411
AccII CGCG 1 cut(s) 139
AciI CCGC 5 cut(s) 29, 73, 105, 137, 350
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 439, 456
AgsI TTSAA 4 cut(s) 289, 419, 439, 476
AhlI ACTAGT 1 cut(s) 463
AluBI AGCT 3 cut(s) 217, 355, 424
AluI AGCT 3 cut(s) 217, 355, 424
Alw26I GTCTC 2 cut(s) 294, 512
AlwI GGATC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 214, 554
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbvI GCAGC 2 cut(s) 226, 541
BcoDI GTCTC 2 cut(s) 294, 512
BcuI ACTAGT 1 cut(s) 463
BfaI CTAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 4 cut(s) 29, 74, 215, 555
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 4 cut(s) 30, 75, 216, 556
BmiI GGNNCC 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 516, 566
BmuI ACTGGG 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu1102I GCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 294, 450
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 456
Bse1I ACTGG 2 cut(s) 151, 185
Bse3DI GCAATG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 294, 450
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 439, 456
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 151, 185
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 2 cut(s) 226, 541
BseYI CCCAGC 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 439, 456
BsmAI GTCTC 2 cut(s) 294, 512
BsmFI GGGAC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 496
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 5 cut(s) 29, 73, 105, 137, 350
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 504
BspQI GCTCTTC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 2 cut(s) 151, 185
BssECI CCNNGG 2 cut(s) 294, 450
BssMI GATC 1 cut(s) 496
BssNAI GTATAC 1 cut(s) 412
BssT1I CCWWGG 2 cut(s) 294, 450
Bst1107I GTATAC 1 cut(s) 412
Bst6I CTCTTC 3 cut(s) 122, 265, 414
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 2 cut(s) 294, 512
BstMBI GATC 1 cut(s) 496
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 223, 232
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 226, 541
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BstZ17I GTATAC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 481
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 172, 484, 493
CviJI RGCY 7 cut(s) 23, 76, 184, 217, 355, 424, 455
CviKI_1 RGCY 7 cut(s) 23, 76, 184, 217, 355, 424, 455
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eam1104I CTCTTC 3 cut(s) 122, 265, 414
EarI CTCTTC 3 cut(s) 122, 265, 414
Eco130I CCWWGG 2 cut(s) 294, 450
Eco57I CTGAAG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 294, 450
ErhI CCWWGG 2 cut(s) 294, 450
FaeI CATG 3 cut(s) 175, 487, 496
FaiI YATR 8 cut(s) 146, 173, 238, 412, 485, 494, 507, 534
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 171, 483, 492
FauI CCCGC 1 cut(s) 144
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 29, 74, 215, 555
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 29, 74, 215, 555
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 225
GluI GCNGC 4 cut(s) 29, 74, 215, 555
GsaI CCCAGC 1 cut(s) 459
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 226
Hin1II CATG 3 cut(s) 175, 487, 496
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 3 cut(s) 11, 42, 129
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 4 cut(s) 102, 317, 412, 469
Hpy188I TCNGA 3 cut(s) 35, 90, 346
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 4 cut(s) 102, 317, 412, 469
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 6 cut(s) 4, 190, 214, 269, 367, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 232
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 3 cut(s) 175, 487, 496
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 496
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 3 cut(s) 36, 81, 352
LpnPI CCDG 8 cut(s) 28, 164, 166, 279, 341, 353, 441, 465
Lsp1109I GCAGC 2 cut(s) 226, 541
LweI GCATC 2 cut(s) 516, 566
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 1 cut(s) 111
MalI GATC 1 cut(s) 498
MbiI CCGCTC 1 cut(s) 31
MboI GATC 1 cut(s) 496
MboII GAAGA 4 cut(s) 109, 252, 292, 431
MflI RGATCY 1 cut(s) 496
MluCI AATT 3 cut(s) 208, 376, 434
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 4 cut(s) 103, 113, 135, 270
MnlI CCTC 3 cut(s) 65, 508, 552
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 223, 232
NdeII GATC 1 cut(s) 496
NlaIII CATG 3 cut(s) 175, 487, 496
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 11, 129
PkrI GCNGC 4 cut(s) 30, 75, 216, 556
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 4 cut(s) 29, 74, 215, 555
Sau3AI GATC 1 cut(s) 496
SchI GAGTC 1 cut(s) 36
SetI ASST 5 cut(s) 219, 357, 372, 426, 574
SfaNI GCATC 2 cut(s) 516, 566
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 463
Sse9I AATT 3 cut(s) 208, 376, 434
SsiI CCGC 5 cut(s) 29, 73, 105, 137, 350
SspMI CTAG 1 cut(s) 464
StyI CCWWGG 2 cut(s) 294, 450
TaiI ACGT 1 cut(s) 574
TaqI TCGA 2 cut(s) 48, 334
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 208, 376, 434
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 31, 76
TfiI GAWTC 2 cut(s) 11, 129
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 2 cut(s) 214, 554
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 319
XapI RAATTY 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.