Rorug04G0270100

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009126
Physical Location & Seq
Forward (+)
44305673 .. 44306605
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0270100.1

Sequence Viewer

Length: 483 bp
ATGGGCGTGTTCACTTATGAAACCGAGTTCACCTCTGTCATCCCACCACCAAGACTCTACAAGGCCTTTGTCCTTGATGCTGATAACCTCATCCCCAAGATTGCACCACAGGCTGTGAAGAGTGCTGAAATCGTTCAAGGTGATGGAGGTGTTGGGACCATCAAGAAGATTCACCTTGGTGAAGGAAGCGAATACAGCTATGTGAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTGTACAACTACAGTATAATTGAAGGTGATGCTATCGGAGACAAAGTTGAGAAAATCTCTTACGAGATTAAGTTGGTGGCATCTCCAAGTGGAGGCTCCATCATCAAGAGCACCAGCAACTACCATTGCAAAGGTGAGGTTGAGATCAAGGAAGAGCATGTCAAGGCCGGAAAAGAAAGAGCCGCTGGTTTGTTCAAGATCATTGAGAACCACCTTTTGGCCAACCCTGAGGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

160

Amino Acids

17.53

Weight (kDa)

5.54

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 155 7.9e-23 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 459
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 332, 457
AgsI TTSAA 3 cut(s) 137, 263, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 273
AoxI GGCC 4 cut(s) 63, 405, 459, 471
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 6 cut(s) 22, 152, 164, 191, 278, 386
AvaII GGWCC 1 cut(s) 156
AxyI CCTNAGG 1 cut(s) 468
BalI TGGCCA 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 4 cut(s) 137, 167, 212, 347
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 4 cut(s) 67, 217, 259, 329
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 457
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 39, 90
BseLI CCNNNNNNNGG 2 cut(s) 332, 457
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 459
BshFI GGCC 4 cut(s) 65, 407, 461, 473
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 332, 457
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 4 cut(s) 65, 407, 461, 473
Bsp1286I GDGCHC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 2 cut(s) 384, 438
BspACI CCGC 1 cut(s) 423
BspANI GGCC 4 cut(s) 65, 407, 461, 473
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 157, 337
BspQI GCTCTTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 384, 438
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 2 cut(s) 113, 387
BstAUI TGTACA 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 2 cut(s) 39, 90
BstKTI GATC 2 cut(s) 387, 441
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 384, 438
BstMWI GCNNNNNNNGC 2 cut(s) 110, 195
BstNSI RCATGY 1 cut(s) 401
BstSFI CTRYAG 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 4 cut(s) 65, 407, 461, 473
BtsCI GGATG 2 cut(s) 39, 90
Cfr13I GGNCC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 398
CviJI RGCY 8 cut(s) 65, 113, 198, 336, 407, 422, 461, 473
CviKI_1 RGCY 8 cut(s) 65, 113, 198, 336, 407, 422, 461, 473
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 468
DpnI GATC 2 cut(s) 386, 440
DpnII GATC 2 cut(s) 384, 438
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 113, 387
EarI CTCTTC 2 cut(s) 113, 387
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 2 cut(s) 65, 473
Eco47I GGWCC 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 401
FaiI YATR 4 cut(s) 18, 201, 257, 399
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 2 cut(s) 26, 77
Fsp4HI GCNGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 423
HaeIII GGCC 4 cut(s) 65, 407, 461, 473
HapII CCGG 1 cut(s) 408
Hin1II CATG 1 cut(s) 401
HinfI GANTC 2 cut(s) 54, 169
HpaII CCGG 1 cut(s) 408
HphI GGTGA 6 cut(s) 22, 152, 164, 191, 278, 386
Hpy166II GTNNAC 3 cut(s) 12, 30, 244
Hpy188I TCNGA 2 cut(s) 213, 278
Hpy188III TCNNGA 3 cut(s) 163, 346, 436
Hpy8I GTNNAC 3 cut(s) 12, 30, 244
HpyAV CCTTC 2 cut(s) 176, 257
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 104, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 195
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 1 cut(s) 401
Kzo9I GATC 2 cut(s) 384, 438
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 4 cut(s) 95, 367, 411, 421
LweI GCATC 4 cut(s) 67, 217, 259, 329
MalI GATC 2 cut(s) 386, 440
MboI GATC 2 cut(s) 384, 438
MboII GAAGA 3 cut(s) 130, 178, 404
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 6 cut(s) 43, 98, 140, 326, 370, 463
Mox20I TGGCCA 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 461
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 110, 195
NdeII GATC 2 cut(s) 384, 438
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 2 cut(s) 157, 337
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 177
PceI AGGCCT 2 cut(s) 65, 473
PciSI GCTCTTC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 157, 337
PspPI GGNCC 1 cut(s) 156
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 2 cut(s) 384, 438
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 4 cut(s) 67, 217, 259, 329
SfcI CTRYAG 1 cut(s) 250
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 1 cut(s) 258
SseBI AGGCCT 2 cut(s) 65, 473
SsiI CCGC 1 cut(s) 423
StuI AGGCCT 2 cut(s) 65, 473
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 254
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 33
Van91I CCANNNNNTGG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 156
XceI RCATGY 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.