Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009126

Physical Location & Seq

Genomic Coordinates Forward (+)

49713793 .. 49718223

Gene Structure 4431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG332800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGGAACTGGCTCTTGCAACCCTTGAGAGAGAGCAATTTGCAGCTATTTGCGCTTGTTTCGCTATGGATTTCAAACAAAATACACTCTTCTCCTGCATTGTCCGTGAAGATATTCAAGTCCTTGGGAGACAAATGTATCAGTGAACAACACTTCACCATTCGAGATTATTCTGAAGCGGAGGTGGTCTTAATGCAGGTAGTGAATTTTGAGATTTGTGTGGAAAATGTTGCTTTCGTATACTTTGAAGAGCTTTTACTCCAATTCAAGGGAGTGTCAAAGGTTGGGGAACTAGTGAACTTTGAAGCAGGCATGGACATCATGGATCTACTTTATGAAAAGGAGGAGACAACGATGCTCTATGCTAATCCTCGTTTTCTCGCTGCATCAGTCTTGGCACGTTCGATAACATTGAATTTTGATCTCTTTAAATGCTGTGCCAAAAAAAAAACTTTGTTAGCCGAAAACCAAATGCAGCTAGCTTTAATATCTGTTCTCGAGTGTGATTTTTTATTTGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

174

Amino Acids

19.82

Weight (kDa)

4.97

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01905
fragaria_vesca	FvH4_4g26110 FvH4_4g26110 FvH4_4g26110
malus_domestica	MD13G1015700.v1.1
prunus_persica	Prupe.1G338000_v2.0.a1
pyrus_communis	pycom13g01330 pycom13g01340
rosa_chinensis	RchiOBHm_Chr4g0433681
rosa_laevigata	RLG00000006739
rosa_roxburghii	Rroxscaffold_5G00375120
rosa_rugosa	Rorug04G0270100 Rorug04G0270200 Rorug04G0270300 Rorug04G0270400 Rorug04G0270500 Rorug04G0270600.1
rosa_samantha	Rh4AG325100 Rh4BG332800 Rh4CG348100 Rh4DG329500
rosa_wichuraiana	Rw4G028150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	205, 415
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	75, 118, 248, 268, 305, 415
AhlI	ACTAGT	1 cut(s)	292
AluBI	AGCT	4 cut(s)	46, 253, 478, 482
AluI	AGCT	4 cut(s)	46, 253, 478, 482
Alw26I	GTCTC	2 cut(s)	123, 341
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	497
ApeKI	GCWGC	3 cut(s)	43, 383, 475
ApoI	RAATTY	2 cut(s)	205, 415
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	148
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	497
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BbvI	GCAGC	3 cut(s)	55, 370, 487
BcoDI	GTCTC	2 cut(s)	123, 341
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	2 cut(s)	293, 479
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	3 cut(s)	44, 384, 476
BlsI	GCNGC	3 cut(s)	45, 385, 477
BmeT110I	CYCGRG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	345, 395
BmtI	GCTAGC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	55, 370, 487
BsiHKCI	CYCGRG	1 cut(s)	497
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	2 cut(s)	123, 341
BsoBI	CYCGRG	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	325, 421
BspACI	CCGC	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	187
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	333
BspQI	GCTCTTC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	325, 421
BssNAI	GTATAC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	123
Bst1107I	GTATAC	1 cut(s)	241
Bst6I	CTCTTC	2 cut(s)	94, 243
BstC8I	GCNNGC	2 cut(s)	310, 480
BstDEI	CTNAG	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	328, 424
BstMAI	GTCTC	2 cut(s)	123, 341
BstMBI	GATC	2 cut(s)	325, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 61
BstV1I	GCAGC	3 cut(s)	55, 370, 487
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	310, 480
CfoI	GCGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	313, 322
CviJI	RGCY	6 cut(s)	13, 46, 253, 461, 478, 482
CviKI_1	RGCY	6 cut(s)	13, 46, 253, 461, 478, 482
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	2 cut(s)	327, 423
DpnII	GATC	2 cut(s)	325, 421
DraI	TTTAAA	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	94, 243
EarI	CTCTTC	2 cut(s)	94, 243
Eco130I	CCWWGG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	316, 325
FaiI	YATR	6 cut(s)	67, 241, 314, 323, 336, 363
FatI	CATG	2 cut(s)	312, 321
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	44, 384, 476
Fsp4HI	GCNGC	3 cut(s)	44, 384, 476
FspBI	CTAG	2 cut(s)	293, 479
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	3 cut(s)	44, 384, 476
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	316, 325
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	146, 241, 298
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	164, 497
Hpy8I	GTNNAC	3 cut(s)	146, 241, 298
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	6 cut(s)	19, 43, 98, 196, 386, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 61
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	2 cut(s)	316, 325
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	325, 421
LguI	GCTCTTC	1 cut(s)	243
LpnPI	CCDG	3 cut(s)	108, 182, 294
Lsp1109I	GCAGC	3 cut(s)	55, 370, 487
LweI	GCATC	2 cut(s)	345, 395
MaeI	CTAG	2 cut(s)	293, 479
MaeII	ACGT	1 cut(s)	400
MalI	GATC	2 cut(s)	327, 423
MboI	GATC	2 cut(s)	325, 421
MboII	GAAGA	3 cut(s)	81, 121, 260
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	4 cut(s)	37, 205, 263, 415
MnlI	CCTC	3 cut(s)	175, 337, 381
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	3 cut(s)	191, 429, 485
MwoI	GCNNNNNNNGC	2 cut(s)	52, 61
NdeII	GATC	2 cut(s)	325, 421
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	2 cut(s)	316, 325
PaeR7I	CTCGAG	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	45, 385, 477
PsuI	RGATCY	1 cut(s)	325
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	191, 429, 485
SatI	GCNGC	3 cut(s)	44, 384, 476
Sau3AI	GATC	2 cut(s)	325, 421
SetI	ASST	8 cut(s)	48, 186, 201, 255, 285, 403, 480, 484
SfaNI	GCATC	2 cut(s)	345, 395
Sfr274I	CTCGAG	1 cut(s)	497
SlaI	CTCGAG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	25, 497
SmoI	CTYRAG	2 cut(s)	25, 497
SpeI	ACTAGT	1 cut(s)	292
Sse9I	AATT	4 cut(s)	37, 205, 263, 415
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	293, 479
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	3 cut(s)	163, 404, 498
TasI	AATT	4 cut(s)	37, 205, 263, 415
Tru1I	TTAA	3 cut(s)	191, 429, 485
Tru9I	TTAA	3 cut(s)	191, 429, 485
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	3 cut(s)	43, 383, 475
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	2 cut(s)	205, 415
XhoI	CTCGAG	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	2 cut(s)	293, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.