Rh4DG329500

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009126
Physical Location & Seq
Forward (+)
55284833 .. 55289149
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG329500.1

Sequence Viewer

Length: 660 bp
ATGCAGAGAGAATCCGGTTCGGCTTTGCCGCTCCGAGCAAGACTCATCGACTTCCTCATCCAATCTGCTCAGCGGCTCCAACTTTCTCCGACCGAGAAGTACACCGCCTTGTCACTCTTCGCTCGTAGATTCTACCCGCGTTTTATGTCCCAGTTGGAACAAGGCAATGACATGGGGAACTGGCTCTTGCAACCCTTGAGAGAGAGCAATTTGCAGCTATTTGCGCTTGTTTCGCTATGGATTTCCAACAAAATATTCAAGTCCTTGGGAGACAAATGTATCAGTGAACAACACTTCACCATTCGAGATTATTCTGAAGCGGAGCTGGTCTTAATGCAGGTAGTGAATTTTGAGATTTGTGTGGAAAATGTTGCTTTCGTATACTTTGAAGAGCTTTTACTCCAATTCAAGGGAGTGTCCAAGGCTGGGGAACTAGTGAACTTTGAAGCAGGCATGGACATCATGGATCTACTTTATGAAAAGGAGGAGACAACGATGCTCTATGCTAATCCTCGTTTTCTCGCTGCATCAGTCTTGGTTGCTTCATATGTCATTACAGTTCCCAAACAGAAGTTGGAATTTCCAGTTCTTCCCTGGGGTAAGATCTCGTATGCCTTTTCTTTTGTTATGTGCTTTAACCTGAATCAAATTGGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

219

Amino Acids

25.17

Weight (kDa)

5.35

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 9 - 119 3.8e-06 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 653
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 139
AciI CCGC 5 cut(s) 29, 73, 105, 137, 320
AclWI GGATC 1 cut(s) 474
AcsI RAATTY 2 cut(s) 346, 578
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 409, 426
AgsI TTSAA 4 cut(s) 259, 389, 409, 446
AhlI ACTAGT 1 cut(s) 433
AjnI CCWGG 1 cut(s) 593
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 3 cut(s) 217, 325, 394
AluI AGCT 3 cut(s) 217, 325, 394
Alw26I GTCTC 2 cut(s) 264, 482
AlwI GGATC 1 cut(s) 474
ApeKI GCWGC 2 cut(s) 214, 524
ApoI RAATTY 2 cut(s) 346, 578
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 289
BaeI ACNNNNGTAYC 2 cut(s) 262, 295
BanI GGYRCC 1 cut(s) 653
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BbvI GCAGC 2 cut(s) 226, 511
BciT130I CCWGG 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 264, 482
BcuI ACTAGT 1 cut(s) 433
BfaI CTAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 328
BglII AGATCT 1 cut(s) 603
BisI GCNGC 4 cut(s) 29, 74, 215, 525
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 4 cut(s) 30, 75, 216, 526
Bme1390I CCNGG 1 cut(s) 595
BmiI GGNNCC 2 cut(s) 77, 655
BmrFI CCNGG 1 cut(s) 595
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 486, 536
BmuI ACTGGG 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu1102I GCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 264, 420, 593, 594
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 426
Bse1I ACTGG 3 cut(s) 151, 185, 584
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 595
BseDI CCNNGG 4 cut(s) 264, 420, 593, 594
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 409, 426
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 3 cut(s) 151, 185, 584
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 226, 511
BseYI CCCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 409, 426
BsmAI GTCTC 2 cut(s) 264, 482
BsmFI GGGAC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 466, 603
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 5 cut(s) 29, 73, 105, 137, 320
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 77, 655
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 1 cut(s) 474
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 653
BsrBI CCGCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 3 cut(s) 151, 185, 584
BssECI CCNNGG 4 cut(s) 264, 420, 593, 594
BssMI GATC 2 cut(s) 466, 603
BssNAI GTATAC 1 cut(s) 382
BssT1I CCWWGG 2 cut(s) 264, 420
Bst1107I GTATAC 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 2 cut(s) 122, 384
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 469, 606
BstMAI GTCTC 2 cut(s) 264, 482
BstMBI GATC 2 cut(s) 466, 603
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 223, 232
BstNI CCWGG 1 cut(s) 595
BstSCI CCNGG 1 cut(s) 593
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 226, 511
BstX2I RGATCY 2 cut(s) 466, 603
BstYI RGATCY 2 cut(s) 466, 603
BstZ17I GTATAC 1 cut(s) 382
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 289
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 172, 454, 463
CviJI RGCY 7 cut(s) 23, 76, 184, 217, 325, 394, 425
CviKI_1 RGCY 7 cut(s) 23, 76, 184, 217, 325, 394, 425
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 468, 605
DpnII GATC 2 cut(s) 466, 603
Eam1104I CTCTTC 2 cut(s) 122, 384
EarI CTCTTC 2 cut(s) 122, 384
Eco130I CCWWGG 2 cut(s) 264, 420
Eco57I CTGAAG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 593
EcoT14I CCWWGG 2 cut(s) 264, 420
ErhI CCWWGG 2 cut(s) 264, 420
FaeI CATG 3 cut(s) 175, 457, 466
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 171, 453, 462
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 1 cut(s) 547
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 29, 74, 215, 525
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 29, 74, 215, 525
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 225
GluI GCNGC 4 cut(s) 29, 74, 215, 525
GsaI CCCAGC 1 cut(s) 429
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 226
Hin1II CATG 3 cut(s) 175, 457, 466
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 4 cut(s) 11, 42, 129, 643
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 4 cut(s) 102, 287, 382, 439
Hpy188I TCNGA 3 cut(s) 35, 90, 316
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 4 cut(s) 102, 287, 382, 439
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4V TGCA 5 cut(s) 4, 190, 214, 337, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 232
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 3 cut(s) 175, 457, 466
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 466, 603
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 3 cut(s) 36, 81, 322
Lsp1109I GCAGC 2 cut(s) 226, 511
LweI GCATC 2 cut(s) 486, 536
MaeI CTAG 1 cut(s) 434
MaeIII GTNAC 1 cut(s) 111
MalI GATC 2 cut(s) 468, 605
MbiI CCGCTC 1 cut(s) 31
MboI GATC 2 cut(s) 466, 603
MboII GAAGA 3 cut(s) 109, 401, 581
MflI RGATCY 2 cut(s) 466, 603
MluCI AATT 5 cut(s) 208, 346, 404, 578, 648
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 5 cut(s) 103, 113, 135, 270, 555
MnlI CCTC 3 cut(s) 65, 478, 522
MseI TTAA 2 cut(s) 332, 636
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 595
MvaI CCWGG 1 cut(s) 595
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 223, 232
NdeI CATATG 1 cut(s) 547
NdeII GATC 2 cut(s) 466, 603
NlaIII CATG 3 cut(s) 175, 457, 466
NlaIV GGNNCC 2 cut(s) 77, 655
NmuCI GTSAC 1 cut(s) 111
PasI CCCWGGG 1 cut(s) 594
PciSI GCTCTTC 1 cut(s) 384
PfeI GAWTC 3 cut(s) 11, 129, 643
PkrI GCNGC 4 cut(s) 30, 75, 216, 526
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 77, 655
PsuI RGATCY 2 cut(s) 466, 603
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 332, 636
SatI GCNGC 4 cut(s) 29, 74, 215, 525
Sau3AI GATC 2 cut(s) 466, 603
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 595
SetI ASST 5 cut(s) 219, 327, 342, 396, 642
SfaNI GCATC 2 cut(s) 486, 536
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 433
Sse9I AATT 5 cut(s) 208, 346, 404, 578, 648
SsiI CCGC 5 cut(s) 29, 73, 105, 137, 320
SspI AATATT 1 cut(s) 255
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 593
StyI CCWWGG 2 cut(s) 264, 420
TaaI ACNGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 48, 304
TaqII GACCGA 1 cut(s) 107
TasI AATT 5 cut(s) 208, 346, 404, 578, 648
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 31, 76
TfiI GAWTC 3 cut(s) 11, 129, 643
Tru1I TTAA 2 cut(s) 332, 636
Tru9I TTAA 2 cut(s) 332, 636
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 2 cut(s) 214, 524
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 492, 534
TspRI CASTG 1 cut(s) 289
XapI RAATTY 2 cut(s) 346, 578
XcmI CCANNNNNNNNNTGG 2 cut(s) 571, 591
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.