Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009126

Physical Location & Seq

Genomic Coordinates Reverse (-)

10074455 .. 10077586

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAGAGAGAATCCGGTTCGGCTTTGCCGCTCCGAGCAAGACTCATCGACTTCCTCATCCAATCTGCTCTGTACACCGCCTTGTCACTCTTCGCTCATAGATTCTACCCGCGTTTTCTGTCCCAGTTGGAACAAGGCAATGAGATGGGGAACTGGCTCTTGCAACCCTTGAGAGAGAGCAATTTGCAGCTATTTGTGCTTGTTTCGCTATGGATTTCAAACAAAATACACTCTTCTCCTGCATTGTCCGTGAAGATATTCAAGTCCTTGGGAGACAAATGTATCAGTGAACAACACTTCACCATTCGAGATTATTCTGAAGCGGAGGTGGTCCTAATGCAGGTAGTGAATTTTGAGATTTGTGTGGAAAATGTTGCTTTTGTATACTTTGAAGAGCTTTTACTCCAATTCAAGGGAGTGTCAAAGGTTGGGGAACTAGTGAACTTTGAAGCAGGCATGGACATCATGGATCTACTTTATGAAAAGGAGGAGACAACGATGCTCTATGCTAATCCTCGTTTTCTCTCTGCATCAGTCTTGGTTGCTTCATATGTCACTACAGTTCCCAAACAGAAGTTAGAATTTCCGGTTCTTCCCTGGGTTAAGTTTGTAACCGGATGCGAAGAAGAGGATATTGTAGAGATGGTCAGAGAAATTCTTAAGCACGTATTCCATCTTTCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

229

Amino Acids

26.23

Weight (kDa)

5.2

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01905
fragaria_vesca	FvH4_4g26110 FvH4_4g26110 FvH4_4g26110
malus_domestica	MD13G1015700.v1.1
prunus_persica	Prupe.1G338000_v2.0.a1
pyrus_communis	pycom13g01330 pycom13g01340
rosa_chinensis	RchiOBHm_Chr4g0433681
rosa_laevigata	RLG00000006739
rosa_roxburghii	Rroxscaffold_5G00375120
rosa_rugosa	Rorug04G0270100 Rorug04G0270200 Rorug04G0270300 Rorug04G0270400 Rorug04G0270500 Rorug04G0270600.1
rosa_samantha	Rh4AG325100 Rh4BG332800 Rh4CG348100 Rh4DG329500
rosa_wichuraiana	Rw4G028150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	112
AciI	CCGC	4 cut(s)	29, 78, 110, 323
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	3 cut(s)	349, 581, 654
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	340, 412
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	5 cut(s)	219, 262, 392, 412, 449
AhlI	ACTAGT	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	2 cut(s)	190, 397
AluI	AGCT	2 cut(s)	190, 397
Alw26I	GTCTC	2 cut(s)	267, 485
AlwI	GGATC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	3 cut(s)	349, 581, 654
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	331
BaeI	ACNNNNGTAYC	2 cut(s)	265, 298
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	139, 637, 681
BciT130I	CCWGG	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	267, 485
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	2 cut(s)	29, 188
BlsI	GCNGC	2 cut(s)	30, 189
Bme1390I	CCNGG	1 cut(s)	598
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	598
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	3 cut(s)	489, 539, 608
BmuI	ACTGGG	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	27, 59
BpuEI	CTTGAG	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	667
BsaJI	CCNNGG	3 cut(s)	267, 596, 597
BsaWI	WCCGGW	3 cut(s)	14, 586, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 412
Bse1I	ACTGG	2 cut(s)	124, 158
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	3 cut(s)	267, 596, 597
BseGI	GGATG	2 cut(s)	57, 623
BseLI	CCNNNNNNNGG	2 cut(s)	340, 412
BseMI	GCAATG	1 cut(s)	145
BseNI	ACTGG	2 cut(s)	124, 158
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	15, 587, 615
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	340, 412
BsmAI	GTCTC	2 cut(s)	267, 485
BsmFI	GGGAC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	4 cut(s)	29, 78, 110, 323
BspFNI	CGCG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	387
BspTI	CTTAAG	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	124, 158
BssECI	CCNNGG	3 cut(s)	267, 596, 597
BssMI	GATC	1 cut(s)	469
BssNAI	GTATAC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	267
Bst1107I	GTATAC	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	4 cut(s)	95, 238, 387, 621
BstAFI	CTTAAG	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	667
BstC8I	GCNNGC	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	57, 623
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	267, 485
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 205
BstNI	CCWGG	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	596
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BstZ17I	GTATAC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	57, 623
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	457, 466
CviJI	RGCY	4 cut(s)	23, 157, 190, 397
CviKI_1	RGCY	4 cut(s)	23, 157, 190, 397
CviQI	GTAC	1 cut(s)	73
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eam1104I	CTCTTC	4 cut(s)	95, 238, 387, 621
EarI	CTCTTC	4 cut(s)	95, 238, 387, 621
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	596
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	460, 469
FaiI	YATR	9 cut(s)	99, 211, 385, 458, 467, 480, 507, 550, 552
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	456, 465
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	29, 188
FokI	GGATG	2 cut(s)	44, 630
Fsp4HI	GCNGC	2 cut(s)	29, 188
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	2 cut(s)	29, 188
HapII	CCGG	3 cut(s)	15, 587, 615
Hin1II	CATG	2 cut(s)	460, 469
HinfI	GANTC	3 cut(s)	11, 42, 102
HpaII	CCGG	3 cut(s)	15, 587, 615
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	4 cut(s)	75, 290, 385, 442
Hpy188I	TCNGA	3 cut(s)	35, 319, 650
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	4 cut(s)	75, 290, 385, 442
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	6 cut(s)	4, 163, 187, 242, 340, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 205
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	2 cut(s)	460, 469
Kzo9I	GATC	1 cut(s)	469
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	36
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	3 cut(s)	489, 539, 608
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	3 cut(s)	84, 553, 610
MalI	GATC	1 cut(s)	471
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	1 cut(s)	469
MboII	GAAGA	7 cut(s)	82, 225, 265, 404, 584, 635, 638
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	5 cut(s)	181, 349, 407, 581, 654
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	65, 319, 481, 525, 622
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	603, 660
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	3 cut(s)	15, 587, 615
MspR9I	CCNGG	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	196, 205
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	2 cut(s)	460, 469
NmuCI	GTSAC	2 cut(s)	84, 553
PasI	CCCWGGG	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	11, 102
PkrI	GCNGC	2 cut(s)	30, 189
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	603, 660
SatI	GCNGC	2 cut(s)	29, 188
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	598
SetI	ASST	6 cut(s)	192, 330, 345, 399, 429, 669
SfaNI	GCATC	3 cut(s)	489, 539, 608
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	169, 659
SmoI	CTYRAG	2 cut(s)	169, 659
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	5 cut(s)	181, 349, 407, 581, 654
SsiI	CCGC	4 cut(s)	29, 78, 110, 323
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	596
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	2 cut(s)	48, 307
TasI	AATT	5 cut(s)	181, 349, 407, 581, 654
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	11, 102
Tru1I	TTAA	2 cut(s)	603, 660
Tru9I	TTAA	2 cut(s)	603, 660
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	84, 553
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	84, 553
TspDTI	ATGAA	2 cut(s)	495, 537
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	292
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	3 cut(s)	349, 581, 654
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.