Rw4G028150

Cyclin, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009126
Physical Location & Seq
Forward (+)
54840277 .. 54843398
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G028150.1

Sequence Viewer

Length: 714 bp
ATGCAGAGAGAATCCGGTTCGGCTTTGCCTCTCCGAGCAAGACTCATCGACTTCCTCATCCAATCTGCTCAGCGGCTCCAACGTTCTCCGACCGAGAAGTACACCGCCTTGTCACTCTTCGCTCATAGATTCTACCCGCGTTTTATGTCCCAGTTGGAACAAGGCAATGACATGGGGAACTGGCTCTTGCAACCCTTGAGAGAGAGCAATTTGCAGCTATTTGCGCTTGTTTCGCTATGGATTTCAAACAAAATACACTCTTCTCCTGCATTGTCCGTGAAGATATTCAAGTCCTTGGGAGACAAATGTATCAGTGAACAACACTTCACCATTCGAGATTATTCTGAAGCGGAGGTGGTCTTAATGCAGGTAGTGAATTTTGAGATTTGTGTGGAAAATGTTGCTTTCGTATACTTTGAAGAGCTTTTACTCCAATTCAAGGGAGTGTCAAAGGTTGGGGAACTAGTGAACTTTGAAGCAGGCATGGACATCATGGATCTACTTTATGAAAAGGAGGAGACAACGATGCTCTATGCTGATCCTCGTTTTCTCGCTGCATCAGTCTTGGTTGCTTCATATGTCATTACAGTTCCCAAACAGAAGTTGGAATTTCCAGTTCTTCCCTGGGTTAAGTTTGTAACCGGATGCGAAGAAGAGGATATTGTAGAGATGGTCAGAGAAATTCTTAAGCACGTATTCCATCTTTCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0050789 GO:0050794 GO:0051726 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_N

Protein Analysis

237

Amino Acids

27.31

Weight (kDa)

5.34

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 9 - 129 9.8e-06 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 411
AccII CGCG 1 cut(s) 139
AciI CCGC 4 cut(s) 73, 105, 137, 350
AclI AACGTT 1 cut(s) 82
AclWI GGATC 2 cut(s) 504, 533
AcsI RAATTY 3 cut(s) 376, 608, 681
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 439
AflII CTTAAG 1 cut(s) 686
AgsI TTSAA 5 cut(s) 246, 289, 419, 439, 476
AhlI ACTAGT 1 cut(s) 463
AjnI CCWGG 1 cut(s) 623
AluBI AGCT 2 cut(s) 217, 424
AluI AGCT 2 cut(s) 217, 424
Alw26I GTCTC 2 cut(s) 294, 512
AlwI GGATC 2 cut(s) 504, 533
ApeKI GCWGC 2 cut(s) 214, 554
ApoI RAATTY 3 cut(s) 376, 608, 681
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbvI GCAGC 2 cut(s) 226, 541
BccI CCATC 2 cut(s) 664, 708
BciT130I CCWGG 1 cut(s) 625
BcoDI GTCTC 2 cut(s) 294, 512
BcuI ACTAGT 1 cut(s) 463
BfaI CTAG 1 cut(s) 464
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 3 cut(s) 74, 215, 555
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 3 cut(s) 75, 216, 556
Bme1390I CCNGG 1 cut(s) 625
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 625
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 516, 566, 635
BmuI ACTGGG 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu1102I GCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 694
BsaJI CCNNGG 3 cut(s) 294, 623, 624
BsaWI WCCGGW 2 cut(s) 14, 641
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse1I ACTGG 3 cut(s) 151, 185, 614
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 625
BseDI CCNNGG 3 cut(s) 294, 623, 624
BseGI GGATG 2 cut(s) 57, 650
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 3 cut(s) 151, 185, 614
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 2 cut(s) 226, 541
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 15, 642
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 2 cut(s) 294, 512
BsmFI GGGAC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 496, 538
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 4 cut(s) 73, 105, 137, 350
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 2 cut(s) 504, 533
BspQI GCTCTTC 1 cut(s) 414
BspTI CTTAAG 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 3 cut(s) 151, 185, 614
BssECI CCNNGG 3 cut(s) 294, 623, 624
BssMI GATC 2 cut(s) 496, 538
BssNAI GTATAC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 294
Bst1107I GTATAC 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 4 cut(s) 122, 265, 414, 648
BstAFI CTTAAG 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 694
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 57, 650
BstFNI CGCG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 499, 541
BstMAI GTCTC 2 cut(s) 294, 512
BstMBI GATC 2 cut(s) 496, 538
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 223, 232
BstNI CCWGG 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 623
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 226, 541
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BstZ17I GTATAC 1 cut(s) 412
BtsCI GGATG 2 cut(s) 57, 650
BtsIMutI CAGTG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 481
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 172, 484, 493
CviJI RGCY 5 cut(s) 23, 76, 184, 217, 424
CviKI_1 RGCY 5 cut(s) 23, 76, 184, 217, 424
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 498, 540
DpnII GATC 2 cut(s) 496, 538
Eam1104I CTCTTC 4 cut(s) 122, 265, 414, 648
EarI CTCTTC 4 cut(s) 122, 265, 414, 648
Eco130I CCWWGG 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 3 cut(s) 175, 487, 496
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 171, 483, 492
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 1 cut(s) 577
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 74, 215, 555
FokI GGATG 2 cut(s) 44, 657
Fsp4HI GCNGC 3 cut(s) 74, 215, 555
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 225
GluI GCNGC 3 cut(s) 74, 215, 555
HapII CCGG 2 cut(s) 15, 642
HhaI GCGC 1 cut(s) 226
Hin1II CATG 3 cut(s) 175, 487, 496
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 3 cut(s) 11, 42, 129
HpaII CCGG 2 cut(s) 15, 642
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 4 cut(s) 102, 317, 412, 469
Hpy188I TCNGA 4 cut(s) 35, 90, 346, 677
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 4 cut(s) 102, 317, 412, 469
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 2 cut(s) 82, 693
HpyCH4V TGCA 6 cut(s) 4, 190, 214, 269, 367, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 232
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 82, 693
Hsp92II CATG 3 cut(s) 175, 487, 496
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 496, 538
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 2 cut(s) 226, 541
LweI GCATC 3 cut(s) 516, 566, 635
MaeI CTAG 1 cut(s) 464
MaeII ACGT 2 cut(s) 82, 693
MaeIII GTNAC 2 cut(s) 111, 637
MalI GATC 2 cut(s) 498, 540
MboI GATC 2 cut(s) 496, 538
MboII GAAGA 7 cut(s) 109, 252, 292, 431, 611, 662, 665
MflI RGATCY 1 cut(s) 496
MluCI AATT 5 cut(s) 208, 376, 434, 608, 681
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 4 cut(s) 103, 113, 135, 585
MnlI CCTC 6 cut(s) 39, 65, 346, 508, 552, 649
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 3 cut(s) 362, 630, 687
MspA1I CMGCKG 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 2 cut(s) 15, 642
MspR9I CCNGG 1 cut(s) 625
MvaI CCWGG 1 cut(s) 625
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 223, 232
NdeI CATATG 1 cut(s) 577
NdeII GATC 2 cut(s) 496, 538
NlaIII CATG 3 cut(s) 175, 487, 496
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 111
PasI CCCWGGG 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 11, 129
PkrI GCNGC 3 cut(s) 75, 216, 556
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 694
Psp1406I AACGTT 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 623
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 3 cut(s) 362, 630, 687
SatI GCNGC 3 cut(s) 74, 215, 555
Sau3AI GATC 2 cut(s) 496, 538
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 625
SetI ASST 7 cut(s) 85, 219, 357, 372, 426, 456, 696
SfaNI GCATC 3 cut(s) 516, 566, 635
SmlI CTYRAG 2 cut(s) 196, 686
SmoI CTYRAG 2 cut(s) 196, 686
SpeI ACTAGT 1 cut(s) 463
Sse9I AATT 5 cut(s) 208, 376, 434, 608, 681
SsiI CCGC 4 cut(s) 73, 105, 137, 350
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 623
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 2 cut(s) 85, 696
TaqI TCGA 2 cut(s) 48, 334
TaqII GACCGA 1 cut(s) 107
TasI AATT 5 cut(s) 208, 376, 434, 608, 681
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 2 cut(s) 11, 129
Tru1I TTAA 3 cut(s) 362, 630, 687
Tru9I TTAA 3 cut(s) 362, 630, 687
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 2 cut(s) 214, 554
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 522, 564
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 319
Vha464I CTTAAG 1 cut(s) 686
XapI RAATTY 3 cut(s) 376, 608, 681
XcmI CCANNNNNNNNNTGG 2 cut(s) 601, 621
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.