Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Reverse (-)

424060 .. 425810

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01918.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGATTTCAAAGCCACCACCACTACATTTCACTTTCTTTCACAATCAAGATTCTTCAATTGATACATCGGATTCAAACTTAGCACTTTCTATTGATACATCTAGAAGACGAAGAGACGTTTTGCTCACAATTTCAGGTACACTAATCCCTCAACTGTTCTTCTTCGATCGCAAACGCTCTTCTTCTGCGAATGCCGCTGATTTTTTCAACTTCGGAGCTCCTCCACCTGAGCCTGAACGCACCGTGGAACTTGCTCAGGAAGGATTAAGAAAAAATGCAGAGAATATAAAAAGAATCAAGGAGATTATGATAGAAAAGAAGTTGTGGAAAGAAGGAGGGAAAGAGCTAAGGAGAAGTGCATCAAACATGAAGCAAGACTTTTACTTAATCATCCAAGCAAAGCCTCCTAAGGATAGACCTCTTTTTAGGTCTCTTTATTCCTCTCTCTTTAACTCAATCACCAAGATGGATTATGCAGCTAGAGATGGAGATGAAACTAAGGTGTTGGAGTACTATATTAATATTGTTGCAATCCTCGATGATATCTTCCCTCGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

187

Amino Acids

21.53

Weight (kDa)

9.27

Isoelectric Point (pI)

67.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	83 - 184	6.8e-17	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	2 cut(s)	142, 515
AgsI	TTSAA	4 cut(s)	12, 60, 78, 211
AluBI	AGCT	3 cut(s)	221, 349, 482
AluI	AGCT	3 cut(s)	221, 349, 482
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	111, 438
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	558
AseI	ATTAAT	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	454
AxyI	CCTNAGG	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	463, 482
BcoDI	GTCTC	2 cut(s)	111, 438
BfaI	CTAG	2 cut(s)	105, 483
BisI	GCNGC	2 cut(s)	198, 480
BlsI	GCNGC	2 cut(s)	199, 481
BmcAI	AGTACT	1 cut(s)	515
BmsI	GCATC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	115
Bpu10I	CCTNAGC	3 cut(s)	231, 258, 350
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	222, 272
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	111, 438
BsmBI	CGTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	223, 271
BspQI	GCTCTTC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	159, 247
Bst6I	CTCTTC	2 cut(s)	109, 187
BstDEI	CTNAG	6 cut(s)	82, 231, 258, 350, 411, 501
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	111, 438
BstMBI	GATC	1 cut(s)	169
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	141, 514
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	6 cut(s)	16, 221, 235, 349, 406, 482
CviKI_1	RGCY	6 cut(s)	16, 221, 235, 349, 406, 482
CviQI	GTAC	2 cut(s)	141, 514
DdeI	CTNAG	6 cut(s)	82, 231, 258, 350, 411, 501
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	109, 187
EarI	CTCTTC	2 cut(s)	109, 187
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	221
Eco81I	CCTNAGG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	221
EcoRV	GATATC	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	1 cut(s)	373
FaiI	YATR	5 cut(s)	290, 311, 371, 477, 519
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	198, 480
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	198, 480
FspBI	CTAG	2 cut(s)	105, 483
GluI	GCNGC	2 cut(s)	198, 480
Hin1II	CATG	1 cut(s)	373
HinfI	GANTC	3 cut(s)	53, 74, 297
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	73, 218
Hpy188III	TCNNGA	3 cut(s)	50, 105, 260
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	257, 329
HpyCH4III	ACNGT	2 cut(s)	159, 247
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	281, 362, 479, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	6 cut(s)	82, 231, 258, 350, 411, 501
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	218, 226
LpnPI	CCDG	4 cut(s)	123, 243, 245, 249
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	2 cut(s)	105, 483
MaeII	ACGT	1 cut(s)	120
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	8 cut(s)	48, 120, 126, 154, 157, 174, 177, 541
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	60, 132, 558
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	8 cut(s)	162, 234, 332, 417, 432, 454, 548, 564
MseI	TTAA	5 cut(s)	269, 389, 453, 522, 562
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	53, 74, 297
PkrI	GCNGC	2 cut(s)	199, 481
Ple19I	CGATCG	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	142, 515
RsaNI	GTAC	2 cut(s)	141, 514
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	5 cut(s)	269, 389, 453, 522, 562
SatI	GCNGC	2 cut(s)	198, 480
Sau3AI	GATC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	9 cut(s)	123, 142, 223, 232, 351, 424, 434, 484, 507
SfaNI	GCATC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	3 cut(s)	60, 132, 558
SsiI	CCGC	1 cut(s)	198
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	105, 483
SstI	GAGCTC	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	159, 247
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	168, 540, 556
TasI	AATT	3 cut(s)	60, 132, 558
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	53, 74, 297
Tru1I	TTAA	5 cut(s)	269, 389, 453, 522, 562
Tru9I	TTAA	5 cut(s)	269, 389, 453, 522, 562
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	2 cut(s)	386, 510
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	558
XbaI	TCTAGA	1 cut(s)	104
XspI	CTAG	2 cut(s)	105, 483
ZrmI	AGTACT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.