Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Reverse (-)

19797164 .. 19797974

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCATTTAAACCAGCCATACTGCAACACATGAATCCTACAATTTCTTGCAGTCTGAAACAACCCTCTGAGTTTCAGCAGTCGAGGGAGAAGCCACTGCCACTGAAGGGTTTTGAGTTCCATGTCAAGAGAAGAAGAATAGGAGCAATGGCAGCAATAAGCTGGGTGGCACTGCTGGCAAAAGAAGCACTTTTCACAGAAGCTGCTTATGGGTTCGAGTTGCCACTTGTAGCGCCTGATCAGACGGTTGCAGAAGCAGAGGACGAAATCAGAGGGCACGCACAAGCTTTGTTGGAAGTGAAGGATCTGATAGAGTTCGAGTCGTGGAGAGAATTACAGGCAGCTCTGAGGAAGAGCTCATCGTTGTTGAAGCAAGATTTTTACACCATAATTCAAGGGAAACCAGCAAGTGAGAGGCCCCAACTCAGGAAGCTTTATACCGACCTCTTCAACAATGTTACCAGACTTGATTATGCGGCCAGGGACAAAGACGCGTCGTATATCCGACAATGCTATGACAACATTGTTGTAGTTCTGGATCAAATTTTATCAAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

187

Amino Acids

21.27

Weight (kDa)

7.75

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	2 cut(s)	312, 546
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	107, 426
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	3 cut(s)	370, 395, 451
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	6 cut(s)	162, 203, 287, 344, 357, 433
AluI	AGCT	6 cut(s)	162, 203, 287, 344, 357, 433
Alw21I	GWGCWC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	312, 546
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	416, 477
ApeKI	GCWGC	3 cut(s)	152, 203, 341
ApoI	RAATTY	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	164, 190, 353
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	4 cut(s)	153, 204, 342, 477
BlsI	GCNGC	4 cut(s)	154, 205, 343, 478
Bme1390I	CCNGG	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 426
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	107, 426
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	60, 338, 439
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	164, 190, 353
BseYI	CCCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	418, 479
BsiHKAI	GWGCWC	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	107, 426
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	2 cut(s)	418, 479
Bsp1286I	GDGCHC	2 cut(s)	279, 359
Bsp143I	GATC	3 cut(s)	238, 304, 538
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	2 cut(s)	418, 479
BspCNI	CTCAG	3 cut(s)	61, 339, 438
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	312, 546
BspQI	GCTCTTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	238, 304, 538
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	347, 452
BstC8I	GCNNGC	2 cut(s)	177, 279
BstDEI	CTNAG	3 cut(s)	69, 347, 425
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	3 cut(s)	241, 307, 541
BstMBI	GATC	3 cut(s)	238, 304, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 176, 185
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	3 cut(s)	164, 190, 353
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	418, 479
BtsI	GCAGTG	2 cut(s)	95, 170
BtsIMutI	CAGTG	3 cut(s)	95, 101, 170
Cac8I	GCNNGC	2 cut(s)	177, 279
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	2 cut(s)	483, 500
CviAII	CATG	2 cut(s)	31, 122
DdeI	CTNAG	3 cut(s)	69, 347, 425
DpnI	GATC	3 cut(s)	240, 306, 540
DpnII	GATC	3 cut(s)	238, 304, 538
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	347, 452
EarI	CTCTTC	2 cut(s)	347, 452
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	359
FaeI	CATG	2 cut(s)	34, 125
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	2 cut(s)	30, 121
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	153, 204, 342, 477
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	4 cut(s)	153, 204, 342, 477
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	4 cut(s)	153, 204, 342, 477
GsaI	CCCAGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	418, 479
HgaI	GACGC	2 cut(s)	483, 500
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	34, 125
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	2 cut(s)	285, 431
HinfI	GANTC	2 cut(s)	34, 320
Hpy188I	TCNGA	7 cut(s)	57, 70, 243, 272, 309, 348, 506
Hpy188III	TCNNGA	4 cut(s)	127, 427, 536, 552
Hpy99I	CGWCG	1 cut(s)	499
HpyAV	CCTTC	2 cut(s)	100, 295
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	25, 51, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 176, 185
HpyF3I	CTNAG	3 cut(s)	69, 347, 425
Hsp92II	CATG	2 cut(s)	34, 125
HspAI	GCGC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	238, 304, 538
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	3 cut(s)	164, 190, 353
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	3 cut(s)	240, 306, 540
MboI	GATC	3 cut(s)	238, 304, 538
MboII	GAAGA	4 cut(s)	144, 147, 364, 439
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	279, 359
MluCI	AATT	4 cut(s)	42, 332, 390, 543
MluI	ACGCGT	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	273, 529
MnlI	CCTC	7 cut(s)	76, 78, 253, 266, 342, 408, 455
MseI	TTAA	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	152, 176, 185
NdeII	GATC	3 cut(s)	238, 304, 538
NlaIII	CATG	2 cut(s)	34, 125
NlaIV	GGNNCC	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	154, 205, 343, 478
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	4 cut(s)	153, 204, 342, 477
Sau3AI	GATC	3 cut(s)	238, 304, 538
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	279, 359
SetI	ASST	7 cut(s)	164, 205, 289, 346, 359, 435, 447
Sse9I	AATT	4 cut(s)	42, 332, 390, 543
SsiI	CCGC	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	83, 216, 318
TasI	AATT	4 cut(s)	42, 332, 390, 543
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	3 cut(s)	102, 108, 177
TseI	GCWGC	3 cut(s)	152, 203, 341
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	102, 108, 177
XapI	RAATTY	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.