Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Forward (+)

21982161 .. 21982493

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0236800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGGTTCATGAATCCTGCATGTCTTATCAATAAGCTAGGAAGAAGCCACTCCAAGAAGTCATACGAACGGTTGGTGCATGAGGATGACCAGGTCGTGAGGTCCAAGAAGAAGCACGGTTCAGCTCCAAAAGGTTCTATAGATTTGTTCGTGGGGAAAGAGGAGAAGAAATACCCAGTTCCCCTCAAGTACTTTACACACCCAAAGCTCCAAGAACTCCTCAAAGAGTACCAAGAACCCGTGTTTGATCCAAGATTTGATGAGCCGATTGTGCTTGAATGTTCTACGGAGATCTTTGAGCAGTTGCTCCATTATATCGTCAAGACTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

110

Amino Acids

13.0

Weight (kDa)

9.06

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	24 - 105	4e-12	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	2 cut(s)	191, 230
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	37, 125, 208
AluI	AGCT	3 cut(s)	37, 125, 208
AlwI	GGATC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	291
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	176, 209
Bsp143I	GATC	2 cut(s)	247, 291
BspHI	TCATGA	1 cut(s)	9
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	2 cut(s)	247, 291
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	72, 119
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	250, 294
BstMBI	GATC	2 cut(s)	247, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	190, 229
CviAII	CATG	3 cut(s)	10, 21, 80
CviJI	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviKI_1	RGCY	5 cut(s)	37, 48, 125, 208, 265
CviQI	GTAC	2 cut(s)	190, 229
DpnI	GATC	2 cut(s)	249, 293
DpnII	GATC	2 cut(s)	247, 291
Eco47I	GGWCC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	13, 24, 83
FaiI	YATR	6 cut(s)	11, 22, 64, 81, 140, 315
FatI	CATG	3 cut(s)	9, 20, 79
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	1 cut(s)	38
Hin1II	CATG	3 cut(s)	13, 24, 83
HinfI	GANTC	2 cut(s)	13, 325
Hpy188III	TCNNGA	3 cut(s)	10, 97, 322
HpyCH4III	ACNGT	2 cut(s)	72, 119
HpyCH4V	TGCA	2 cut(s)	20, 79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	13, 24, 83
Kzo9I	GATC	2 cut(s)	247, 291
LmnI	GCTCC	3 cut(s)	130, 213, 312
LpnPI	CCDG	4 cut(s)	30, 77, 104, 189
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	1 cut(s)	38
MalI	GATC	2 cut(s)	249, 293
MboI	GATC	2 cut(s)	247, 291
MboII	GAAGA	3 cut(s)	54, 121, 178
MflI	RGATCY	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	5 cut(s)	76, 93, 154, 194, 230
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	247, 291
NlaIII	CATG	3 cut(s)	13, 24, 83
NspI	RCATGY	1 cut(s)	24
PagI	TCATGA	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	92
RsaI	GTAC	2 cut(s)	191, 230
RsaNI	GTAC	2 cut(s)	190, 229
RseI	CAYNNNNRTG	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	247, 291
Sau96I	GGNCC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	7 cut(s)	8, 39, 96, 104, 127, 136, 210
SexAI	ACCWGGT	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	72, 119
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	302
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.