RLG00000022972

psbQ-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011108
Physical Location & Seq
Reverse (-)
16083241 .. 16084190
950 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022972

Sequence Viewer

Length: 459 bp
ATGCGACTCAAGGATTTTGCTATTAATATCAATAGAAGAATAGGAGCAATAGCAGCACTAAGCCTAGTATTGTTAGCAAAAGATTCAATTTCTACTAAACTTGCATATGGGTTCGACTTTCAACTGGTGGCACCTGATCAGACAATTGAAGAGGCAGAGAGAGGTATCATTGGACATGCACAAGCTTTATTACAAGTGAAAGAACTGATAGAGTCAGAGTCATGGGGACAAGTACAAACAGCTGTCCGGAAGAGCTCGCCGTTCTTGAAGCAGGACATTTATACCATTATTCAACAAAAACCAGGAAATGAGAGGCCCCTATTGAGGAAACTGTATTCCAATCTCTTCAACAATGTTACAAGACTTGATTATGCAGCAAGGGACAGAGATGCATCACGAATTCGTGAATGCTATGAGAATATTGTGATGGTTCTTAATGAAGTTTTATCTAGACTATAG

Protein Analysis

153

Amino Acids

17.32

Weight (kDa)

9.09

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 46 - 152 1.1e-19 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01918
fragaria_vesca FvH4_1g27614
malus_domestica MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica Prupe.3G011900_v2.0.a1
pyrus_communis pycom09g19000 pycom17g27090
rosa_chinensis RchiOBHm_Chr3g0487781
rosa_laevigata RLG00000022972
rosa_multiflora Rmu_sc0005611.1_g000005
rosa_roxburghii Rroxscaffold_6G00394480
rosa_rugosa Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana Rw3G025240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 246
AcsI RAATTY 1 cut(s) 399
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 6 cut(s) 87, 122, 149, 268, 293, 349
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 3 cut(s) 185, 242, 255
AluI AGCT 3 cut(s) 185, 242, 255
Alw21I GWGCWC 1 cut(s) 257
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 53, 374
ApoI RAATTY 1 cut(s) 399
AseI ATTAAT 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 65, 386
BccI CCATC 1 cut(s) 421
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 136
BfaI CTAG 2 cut(s) 65, 450
BfmI CTRYAG 1 cut(s) 455
BisI GCNGC 2 cut(s) 54, 375
BlsI GCNGC 2 cut(s) 55, 376
Bme1390I CCNGG 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 132, 317
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 379, 401
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 246
BseBI CCWGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 2 cut(s) 65, 386
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 247
BslFI GGGAC 2 cut(s) 240, 395
BslI CCNNNNNNNGG 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 240, 395
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 257
Bsp13I TCCGGA 1 cut(s) 246
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 1 cut(s) 316
BspEI TCCGGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 132, 317
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 129
BssMI GATC 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 3 cut(s) 144, 245, 350
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 59
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 65, 386
BsuRI GGCC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 233
CviAII CATG 2 cut(s) 176, 222
CviJI RGCY 5 cut(s) 63, 185, 242, 255, 316
CviKI_1 RGCY 5 cut(s) 63, 185, 242, 255, 316
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 3 cut(s) 144, 245, 350
EarI CTCTTC 3 cut(s) 144, 245, 350
Ecl136II GAGCTC 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 257
FaeI CATG 2 cut(s) 179, 225
FaiI YATR 8 cut(s) 106, 108, 177, 223, 282, 372, 414, 457
FaqI GGGAC 2 cut(s) 240, 395
FatI CATG 2 cut(s) 175, 221
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 54, 375
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 54, 375
FspBI CTAG 2 cut(s) 65, 450
GluI GCNGC 2 cut(s) 54, 375
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 247
Hin1II CATG 2 cut(s) 179, 225
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 4 cut(s) 6, 83, 212, 218
HpaII CCGG 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 141, 217
Hpy188III TCNNGA 5 cut(s) 247, 265, 396, 404, 450
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 104, 179, 374, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 2 cut(s) 179, 225
Kpn2I TCCGGA 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 6 cut(s) 110, 147, 257, 260, 288, 315
Lsp1109I GCAGC 2 cut(s) 65, 386
LweI GCATC 2 cut(s) 379, 401
MaeI CTAG 2 cut(s) 65, 450
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 4 cut(s) 48, 161, 262, 337
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 3 cut(s) 87, 144, 399
MlyI GAGTC 2 cut(s) 221, 227
MnlI CCTC 4 cut(s) 145, 155, 306, 318
Mph1103I ATGCAT 1 cut(s) 394
MroI TCCGGA 1 cut(s) 246
MseI TTAA 2 cut(s) 24, 435
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeI CATATG 1 cut(s) 106
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 179, 225
NlaIV GGNNCC 2 cut(s) 132, 317
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 245
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 55, 376
PleI GAGTC 2 cut(s) 220, 226
PpsI GAGTC 2 cut(s) 220, 226
PshBI ATTAAT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 132, 317
PspPI GGNCC 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SacI GAGCTC 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 24, 435
SatI GCNGC 2 cut(s) 54, 375
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 2 cut(s) 221, 227
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 257
SetI ASST 5 cut(s) 136, 166, 187, 244, 257
SfaNI GCATC 2 cut(s) 379, 401
SfcI CTRYAG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 87, 144, 399
SspI AATATT 1 cut(s) 421
SspMI CTAG 2 cut(s) 65, 450
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 114
TasI AATT 3 cut(s) 87, 144, 399
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 24, 435
Tru9I TTAA 2 cut(s) 24, 435
TseI GCWGC 2 cut(s) 53, 374
TspDTI ATGAA 1 cut(s) 453
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 1 cut(s) 179
XspI CTAG 2 cut(s) 65, 450
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.