Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Reverse (-)

35886333 .. 35894928

Gene Structure 8596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1282000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAACAGAAAGATACATCAGCTGTGTATGCTATTAGCAGCAACAATTACAACGCTATGGTGGCCAAGGACTTGTCTGATCATCACAGCCGTTGATGCAGACCCACAGATCAATCTATTAAACAGGGGCTGCAGCCAATACAATGTCACCAACGCGTCCGAGTTCTATACCAACCTCAACGCCACATTTTCCGACCTCGGAACGCAACTGATGGAAAACAGCAGCCACTTTGCGACGGCACAGCAGGTCAGGGGTTCTAACCCTGTATACGCTATGGTGCAGTGTAGGAACTACCTCTCCGCTGCTGACTGCGTTGCTTGCTTCACCGCTGCCGTGTCTCAAATTCGCAACTGCTCCGCTGCCAACGGTGGTCGTGTCATCTATGATGGTTGCTTCCTCAGAAGAACAACAATGGCATTTAACCCAGCCATACTGCAACACATGAATCCTACAATTTCTTGCTGTCTCAAACAACCCTATGAGTTTCAGCAGTTGAGGGAGAAGCCATTGCCACTGAAGGGTTTTGAGTTCCATGTCAAGAGAAGAAGAATAGGAGCAATGGCAGCAATAAGCTGGGTGGCACTGCTGGCAAAAGAAGCACTTTTCACAGTAGCTGCTTCTGGGTTCGAGCTACCACTGGTAGCGCCTGATCAGACGGTTGCAGAAGCGGAGGACAAAATCAGAGGGCACGCACAAGCTTTGTTGGAAGTGAAGGATCTGATAGAGTTCGAGTCGTGGAGAGAATTACAGGCAGCTCTGAGGAAGAGCTCATCGTTGTTGAAGCAAGATTTTTACACCATAATTCAAGGGAAACCAGCAAGTGAGAGGCCCCAACTCAGGAAGCTTTATACCAACCTCTTCAACAATGTTACCCGACTTGATTATGCAACTAGGGACAAAGACGCATCGTATATCCGACAATGCTATGACAACATTGTTGTAGTTCTGGATCAAATTTTATCAAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

324

Amino Acids

36.42

Weight (kDa)

8.84

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	44 - 134	2.1e-16	Salt stress response/antifungal
PsbQ	PF05757	217 - 323	9.1e-21	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	300, 327, 357, 668
AclWI	GGATC	2 cut(s)	723, 957
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	342, 954
AcuI	CTGAAG	1 cut(s)	536
AfiI	CCNNNNNNNGG	2 cut(s)	518, 837
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	781, 806, 862
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	8 cut(s)	22, 573, 614, 631, 698, 755, 768, 844
AluI	AGCT	8 cut(s)	22, 573, 614, 631, 698, 755, 768, 844
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	2 cut(s)	342, 470
AlwI	GGATC	2 cut(s)	723, 957
AlwNI	CAGNNNCTG	2 cut(s)	129, 614
AoxI	GGCC	2 cut(s)	62, 827
ApoI	RAATTY	2 cut(s)	342, 954
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	1 cut(s)	828
AsuHPI	GGTGA	2 cut(s)	139, 316
BaeGI	GKGCMC	1 cut(s)	690
BalI	TGGCCA	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	770
BccI	CCATC	2 cut(s)	205, 380
BceAI	ACGGC	3 cut(s)	74, 252, 317
BclI	TGATCA	2 cut(s)	78, 649
BcoDI	GTCTC	2 cut(s)	342, 470
BfaI	CTAG	1 cut(s)	891
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	828
BmiI	GGNNCC	1 cut(s)	830
BmsI	GCATC	2 cut(s)	85, 914
BsaJI	CCNNGG	2 cut(s)	65, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 837
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	2 cut(s)	506, 564
BseDI	CCNNGG	2 cut(s)	65, 196
BseLI	CCNNNNNNNGG	2 cut(s)	518, 837
BseMI	GCAATG	2 cut(s)	506, 564
BseMII	CTCAG	3 cut(s)	412, 749, 850
BseNI	ACTGG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	690
BseYI	CCCAGC	2 cut(s)	424, 573
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	64, 829
BsiHKAI	GWGCWC	1 cut(s)	770
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	518, 837
BsmAI	GTCTC	2 cut(s)	342, 470
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	2 cut(s)	64, 829
Bsp1286I	GDGCHC	2 cut(s)	690, 770
Bsp143I	GATC	5 cut(s)	78, 108, 649, 715, 949
BspACI	CCGC	4 cut(s)	300, 327, 357, 668
BspANI	GGCC	2 cut(s)	64, 829
BspCNI	CTCAG	3 cut(s)	411, 750, 849
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	830
BspMAI	CTGCAG	1 cut(s)	134
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	723, 957
BspQI	GCTCTTC	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	506, 564
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	65, 196
BssMI	GATC	5 cut(s)	78, 108, 649, 715, 949
BssNAI	GTATAC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	65
Bst1107I	GTATAC	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	368, 610, 658
Bst6I	CTCTTC	2 cut(s)	758, 863
BstC8I	GCNNGC	3 cut(s)	319, 588, 690
BstDEI	CTNAG	3 cut(s)	398, 758, 836
BstFNI	CGCG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	5 cut(s)	81, 111, 652, 718, 952
BstMAI	GTCTC	2 cut(s)	342, 470
BstMBI	GATC	5 cut(s)	78, 108, 649, 715, 949
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 61, 95, 318, 563, 587, 596
BstSFI	CTRYAG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	64, 829
BtsI	GCAGTG	2 cut(s)	287, 581
BtsIMutI	CAGTG	4 cut(s)	287, 512, 581, 635
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	319, 588, 690
CaiI	CAGNNNCTG	2 cut(s)	129, 614
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	828
CseI	GACGC	2 cut(s)	144, 911
CviAII	CATG	2 cut(s)	442, 533
DdeI	CTNAG	3 cut(s)	398, 758, 836
DpnI	GATC	5 cut(s)	80, 110, 651, 717, 951
DpnII	GATC	5 cut(s)	78, 108, 649, 715, 949
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	2 cut(s)	758, 863
EarI	CTCTTC	2 cut(s)	758, 863
Ecl136II	GAGCTC	1 cut(s)	768
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	770
Eco53kI	GAGCTC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	768
EcoO109I	RGGNCCY	1 cut(s)	828
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	445, 536
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	2 cut(s)	441, 532
FbaI	TGATCA	2 cut(s)	78, 649
FblI	GTMKAC	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	770
FspBI	CTAG	1 cut(s)	891
GlaI	GCGC	1 cut(s)	645
GsaI	CCCAGC	2 cut(s)	428, 577
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	2 cut(s)	64, 829
HgaI	GACGC	2 cut(s)	144, 911
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	2 cut(s)	445, 536
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HindIII	AAGCTT	2 cut(s)	696, 842
HinfI	GANTC	2 cut(s)	445, 731
HphI	GGTGA	2 cut(s)	139, 316
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188III	TCNNGA	4 cut(s)	538, 838, 947, 963
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	511, 706
HpyCH4III	ACNGT	3 cut(s)	368, 610, 658
HpyCH4V	TGCA	6 cut(s)	98, 132, 280, 436, 662, 887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 61, 95, 318, 563, 587, 596
HpyF3I	CTNAG	3 cut(s)	398, 758, 836
Hsp92II	CATG	2 cut(s)	445, 536
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	2 cut(s)	78, 649
Kzo9I	GATC	5 cut(s)	78, 108, 649, 715, 949
LguI	GCTCTTC	1 cut(s)	758
LmnI	GCTCC	2 cut(s)	359, 554
LweI	GCATC	2 cut(s)	85, 914
MaeI	CTAG	1 cut(s)	891
MaeIII	GTNAC	2 cut(s)	145, 868
MalI	GATC	5 cut(s)	80, 110, 651, 717, 951
MboI	GATC	5 cut(s)	78, 108, 649, 715, 949
MboII	GAAGA	5 cut(s)	414, 555, 558, 775, 850
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	2 cut(s)	690, 770
MlsI	TGGCCA	1 cut(s)	64
MluCI	AATT	6 cut(s)	45, 342, 453, 743, 801, 954
MluI	ACGCGT	1 cut(s)	153
MluNI	TGGCCA	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	3 cut(s)	216, 684, 940
Mox20I	TGGCCA	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	64
MseI	TTAA	2 cut(s)	119, 420
Msp20I	TGGCCA	1 cut(s)	64
MspA1I	CMGCKG	4 cut(s)	22, 302, 329, 359
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	7 cut(s)	28, 61, 95, 318, 563, 587, 596
NdeII	GATC	5 cut(s)	78, 108, 649, 715, 949
NlaIII	CATG	2 cut(s)	445, 536
NlaIV	GGNNCC	1 cut(s)	830
NmuCI	GTSAC	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	758
PfeI	GAWTC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
Psp124BI	GAGCTC	1 cut(s)	770
PspFI	CCCAGC	2 cut(s)	424, 573
PspN4I	GGNNCC	1 cut(s)	830
PspPI	GGNCC	1 cut(s)	828
PstI	CTGCAG	1 cut(s)	134
PstNI	CAGNNNCTG	2 cut(s)	129, 614
PsuI	RGATCY	1 cut(s)	715
PvuII	CAGCTG	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	770
SapI	GCTCTTC	1 cut(s)	758
SaqAI	TTAA	2 cut(s)	119, 420
Sau3AI	GATC	5 cut(s)	78, 108, 649, 715, 949
Sau96I	GGNCC	1 cut(s)	828
SchI	GAGTC	1 cut(s)	740
SduI	GDGCHC	2 cut(s)	690, 770
SfaNI	GCATC	2 cut(s)	85, 914
SfcI	CTRYAG	1 cut(s)	130
Sse9I	AATT	6 cut(s)	45, 342, 453, 743, 801, 954
SsiI	CCGC	4 cut(s)	300, 327, 357, 668
SspMI	CTAG	1 cut(s)	891
SstI	GAGCTC	1 cut(s)	770
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	3 cut(s)	368, 610, 658
TaqI	TCGA	2 cut(s)	627, 729
TasI	AATT	6 cut(s)	45, 342, 453, 743, 801, 954
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	2 cut(s)	119, 420
Tru9I	TTAA	2 cut(s)	119, 420
TscAI	CASTG	4 cut(s)	287, 519, 588, 642
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	17, 458
TspRI	CASTG	4 cut(s)	287, 519, 588, 642
XapI	RAATTY	2 cut(s)	342, 954
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.