Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Reverse (-)

21979576 .. 21980520

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0236700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGACCCCCTCTTTCCTCTCCAGCTTGAAATACTCCGACAGTCTCACAGTCGTCGGAATCTCAATCTGCACCGCCATAATCTGCGAAGCCATCTCATGGGTCCTCATCTACCGAACCAACTCCTACAAGTCCCTCCGATCCTCCATAGACAAGGCCGCCAAGAAGCTCGAGACCATGAAGACCGAATCCACCGCCAAAATCACCAAAAAGTCCAAGACCAAGAAGATCGATCGCGTCGAGACCAGCCTCAAGGAGTCCAGCCGCGACCTCTCGCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCCTCGTTCTCTTCGTCGTCTTCGGCCTCCTCAACTCCCTCTTCGAAGGGAAGGCGGTGGCGAAATTACCGTTTAAGCCCTTCGGGTTGGTGATGAAGATGAGCCACAGAGGGTTGCAGGGGGACGATCCGACGGATTGTTCGATGGCATTTTTGTACTTTCTCTGCTCCATCAGTATTCGGACCAATTTGCAGAAGTTCTTGGGCTTCTCGCCGCCCCGGGGTGCCAGTTCCGGGTTGTTCCCCATGCCCGACCCGAAAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

191

Amino Acids

21.0

Weight (kDa)

9.79

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMC3_TMCO1	PF01956	16 - 173	1.2e-32	Integral membrane protein EMC3/TMCO1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	296, 530
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccII	CGCG	2 cut(s)	237, 267
AciI	CCGC	6 cut(s)	75, 159, 195, 265, 362, 521
AclWI	GGATC	2 cut(s)	135, 428
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	99, 527, 540
AgsI	TTSAA	3 cut(s)	31, 283, 289
AluBI	AGCT	2 cut(s)	27, 169
AluI	AGCT	2 cut(s)	27, 169
Alw26I	GTCTC	3 cut(s)	50, 167, 236
AlwI	GGATC	2 cut(s)	135, 428
Ama87I	CYCGRG	2 cut(s)	170, 525
AoxI	GGCC	2 cut(s)	156, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	103, 489
AsuC2I	CCSGG	3 cut(s)	526, 527, 541
AsuHPI	GGTGA	2 cut(s)	196, 409
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	2 cut(s)	170, 525
AvaII	GGWCC	2 cut(s)	103, 489
BanI	GGYRCC	2 cut(s)	296, 530
BbsI	GAAGAC	2 cut(s)	188, 319
BccI	CCATC	3 cut(s)	101, 445, 485
BceAI	ACGGC	1 cut(s)	284
BcnI	CCSGG	3 cut(s)	526, 527, 541
BcoDI	GTCTC	3 cut(s)	50, 167, 236
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	3 cut(s)	159, 265, 521
BlsI	GCNGC	3 cut(s)	160, 266, 522
Bme1390I	CCNGG	3 cut(s)	526, 527, 541
Bme18I	GGWCC	2 cut(s)	103, 489
BmeT110I	CYCGRG	2 cut(s)	170, 525
BmgT120I	GGNCC	2 cut(s)	103, 489
BmiI	GGNNCC	3 cut(s)	104, 298, 532
BmrFI	CCNGG	3 cut(s)	526, 527, 541
BpiI	GAAGAC	2 cut(s)	188, 319
BpmI	CTGGAG	1 cut(s)	7
Bpu14I	TTCGAA	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	3 cut(s)	526, 527, 541
Bsa29I	ATCGAT	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	2 cut(s)	167, 236
BsaJI	CCNNGG	3 cut(s)	524, 525, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 527, 540
Bse1I	ACTGG	1 cut(s)	534
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	524, 525, 526
BseLI	CCNNNNNNNGG	3 cut(s)	99, 527, 540
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	55
Bsh1236I	CGCG	2 cut(s)	237, 267
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	158, 333
BshNI	GGYRCC	2 cut(s)	296, 530
BshVI	ATCGAT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	235
BsiHKCI	CYCGRG	2 cut(s)	170, 525
BsiSI	CCGG	3 cut(s)	294, 526, 540
BslFI	GGGAC	2 cut(s)	118, 443
BslI	CCNNNNNNNGG	3 cut(s)	99, 527, 540
BsmAI	GTCTC	3 cut(s)	50, 167, 236
BsmFI	GGGAC	2 cut(s)	118, 443
BsnI	GGCC	2 cut(s)	158, 333
Bso31I	GGTCTC	2 cut(s)	167, 236
BsoBI	CYCGRG	2 cut(s)	170, 525
Bsp119I	TTCGAA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	140, 228, 232, 433
BspACI	CCGC	6 cut(s)	75, 159, 195, 265, 362, 521
BspANI	GGCC	2 cut(s)	158, 333
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	237, 267
BspLI	GGNNCC	3 cut(s)	104, 298, 532
BspPI	GGATC	2 cut(s)	135, 428
BspQI	GCTCTTC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	2 cut(s)	296, 530
BspTNI	GGTCTC	2 cut(s)	167, 236
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	524, 525, 526
BssMI	GATC	4 cut(s)	140, 228, 232, 433
BssNI	GRCGYC	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	44, 52, 378
Bst6I	CTCTTC	3 cut(s)	284, 323, 353
BstACI	GRCGYC	1 cut(s)	297
BstBI	TTCGAA	1 cut(s)	351
BstFNI	CGCG	2 cut(s)	237, 267
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	4 cut(s)	143, 231, 235, 436
BstMAI	GTCTC	3 cut(s)	50, 167, 236
BstMBI	GATC	4 cut(s)	140, 228, 232, 433
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	524, 525, 539
BstUI	CGCG	2 cut(s)	237, 267
BstV2I	GAAGAC	2 cut(s)	188, 319
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	158, 333
BsuTUI	ATCGAT	1 cut(s)	231
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	103, 489
Cfr9I	CCCGGG	1 cut(s)	525
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	3 cut(s)	99, 178, 553
CviQI	GTAC	1 cut(s)	463
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	4 cut(s)	142, 230, 234, 435
DpnII	GATC	4 cut(s)	140, 228, 232, 433
Eam1104I	CTCTTC	3 cut(s)	284, 323, 353
EarI	CTCTTC	3 cut(s)	284, 323, 353
Eco31I	GGTCTC	2 cut(s)	167, 236
Eco47I	GGWCC	2 cut(s)	103, 489
Eco88I	CYCGRG	2 cut(s)	170, 525
EcoO109I	RGGNCCY	1 cut(s)	103
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
FaeI	CATG	3 cut(s)	102, 181, 556
FaiI	YATR	5 cut(s)	80, 100, 149, 179, 554
FaqI	GGGAC	2 cut(s)	118, 443
FatI	CATG	3 cut(s)	98, 177, 552
Fnu4HI	GCNGC	3 cut(s)	159, 265, 521
Fsp4HI	GCNGC	3 cut(s)	159, 265, 521
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	3 cut(s)	159, 265, 521
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	158, 333
HapII	CCGG	3 cut(s)	294, 526, 540
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	102, 181, 556
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	3 cut(s)	60, 188, 257
HpaII	CCGG	3 cut(s)	294, 526, 540
HphI	GGTGA	2 cut(s)	196, 409
Hpy188I	TCNGA	5 cut(s)	40, 59, 140, 438, 489
Hpy188III	TCNNGA	2 cut(s)	172, 241
Hpy99I	CGWCG	6 cut(s)	59, 242, 305, 308, 326, 442
HpyAV	CCTTC	3 cut(s)	347, 352, 397
HpyCH4III	ACNGT	3 cut(s)	44, 52, 378
HpyCH4V	TGCA	3 cut(s)	72, 424, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	102, 181, 556
HspAI	GCGC	1 cut(s)	297
KasI	GGCGCC	1 cut(s)	296
Kzo9I	GATC	4 cut(s)	140, 228, 232, 433
LguI	GCTCTTC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	8 cut(s)	37, 259, 274, 307, 410, 539, 547, 553
MalI	GATC	4 cut(s)	142, 230, 234, 435
MboI	GATC	4 cut(s)	140, 228, 232, 433
MboII	GAAGA	7 cut(s)	193, 238, 271, 310, 319, 340, 415
MfeI	CAATTG	1 cut(s)	571
MluCI	AATT	3 cut(s)	371, 493, 571
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	3 cut(s)	37, 63, 461
MseI	TTAA	1 cut(s)	381
MspI	CCGG	3 cut(s)	294, 526, 540
MspR9I	CCNGG	3 cut(s)	526, 527, 541
MunI	CAATTG	1 cut(s)	571
MvnI	CGCG	2 cut(s)	237, 267
MwoI	GCNNNNNNNGC	1 cut(s)	305
NarI	GGCGCC	1 cut(s)	297
NciI	CCSGG	3 cut(s)	526, 527, 541
NdeII	GATC	4 cut(s)	140, 228, 232, 433
NlaIII	CATG	3 cut(s)	102, 181, 556
NlaIV	GGNNCC	3 cut(s)	104, 298, 532
NspV	TTCGAA	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	4 cut(s)	237, 309, 318, 446
PfeI	GAWTC	2 cut(s)	60, 188
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	160, 266, 522
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	265
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	104, 298, 532
PspPI	GGNCC	2 cut(s)	103, 489
PspPPI	RGGWCCY	1 cut(s)	103
PvuI	CGATCG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	159, 265, 521
Sau3AI	GATC	4 cut(s)	140, 228, 232, 433
Sau96I	GGNCC	2 cut(s)	103, 489
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	526, 527, 541
SetI	ASST	3 cut(s)	29, 171, 273
SfoI	GGCGCC	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	351
SinI	GGWCC	2 cut(s)	103, 489
SlaI	CTCGAG	1 cut(s)	170
SmaI	CCCGGG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	170, 251
SmoI	CTYRAG	2 cut(s)	170, 251
Sse9I	AATT	3 cut(s)	371, 493, 571
SsiI	CCGC	6 cut(s)	75, 159, 195, 265, 362, 521
SspDI	GGCGCC	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	524, 525, 539
TaaI	ACNGT	3 cut(s)	44, 52, 378
TaqI	TCGA	5 cut(s)	171, 231, 240, 351, 449
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	371, 493, 571
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	3 cut(s)	161, 267, 523
TfiI	GAWTC	2 cut(s)	60, 188
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TspDTI	ATGAA	2 cut(s)	194, 416
TspGWI	ACGGA	1 cut(s)	455
TspMI	CCCGGG	1 cut(s)	525
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	103, 489
XhoI	CTCGAG	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.