Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Reverse (-)

35917325 .. 35918036

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1282100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAATCTTACAATTGCTTGCTGTCTGAAACAACCCTATGAGTTTCAACAGTCGAGGGAGAAGCCACTGCCACCAAAGGGTTTTGAGTTCCATGTCAAGAGAAGAAGAATGGGAGCAATGGCAGCAATAAGCTGGGTGGCACTGCTGACAAAAGAAGCACTTTTCACTGAAGCTGCTTCTGGGTTCGAGTTGCCACTTGTAGCGCCTGATCAGACGGTTACAGAAGCAGATGACAAAATCAGAGGGCACGCACAAGCTTTGTTGGAAGTGAAGGATCTGATAGAGTTCGAGTCGTGGAGAGAATTGCAGGCAGCTCTGAGGAAAAGCTCATCGTTGTTGAAGCAAGATTTTTACACCATAATTCAAGGGAAACCAGCAAGTGAAAGGCCTCAACTCATGAAGCTTTATACCAACCTCTTCAACAATGTTATCAGACTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

148

Amino Acids

16.78

Weight (kDa)

8.93

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	70 - 146	3.6e-13	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	47, 340, 365, 421
AluBI	AGCT	6 cut(s)	132, 173, 257, 314, 327, 403
AluI	AGCT	6 cut(s)	132, 173, 257, 314, 327, 403
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	122, 173, 311
AspLEI	GCGC	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	134, 160, 323
BclI	TGATCA	1 cut(s)	208
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	3 cut(s)	123, 174, 312
BlsI	GCNGC	3 cut(s)	124, 175, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	134, 160, 323
BseYI	CCCAGC	1 cut(s)	132
BshFI	GGCC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	77
BsnI	GGCC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	208, 274
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	396
BspPI	GGATC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	123
BssMI	GATC	2 cut(s)	208, 274
Bst4CI	ACNGT	2 cut(s)	51, 217
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	19, 249, 309
BstDEI	CTNAG	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	211, 277
BstMBI	GATC	2 cut(s)	208, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	134, 160, 323
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	388
BtsI	GCAGTG	2 cut(s)	65, 140
BtsIMutI	CAGTG	3 cut(s)	65, 140, 165
Cac8I	GCNNGC	3 cut(s)	19, 249, 309
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	205
CviAII	CATG	2 cut(s)	92, 397
CviJI	RGCY	8 cut(s)	64, 132, 173, 257, 314, 327, 388, 403
CviKI_1	RGCY	8 cut(s)	64, 132, 173, 257, 314, 327, 388, 403
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	2 cut(s)	210, 276
DpnII	GATC	2 cut(s)	208, 274
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco147I	AGGCCT	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	189
FaeI	CATG	2 cut(s)	95, 400
FaiI	YATR	5 cut(s)	39, 93, 359, 398, 408
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	2 cut(s)	91, 396
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	123, 174, 312
Fsp4HI	GCNGC	3 cut(s)	123, 174, 312
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	3 cut(s)	123, 174, 312
GsaI	CCCAGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	95, 400
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HindIII	AAGCTT	2 cut(s)	255, 401
HinfI	GANTC	2 cut(s)	4, 290
Hpy188I	TCNGA	6 cut(s)	27, 213, 242, 279, 318, 434
Hpy188III	TCNNGA	2 cut(s)	97, 397
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	51, 217
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	95, 400
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	208, 274
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	5 cut(s)	118, 165, 219, 293, 387
Lsp1109I	GCAGC	3 cut(s)	134, 160, 323
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	210, 276
MboI	GATC	2 cut(s)	208, 274
MboII	GAAGA	3 cut(s)	114, 117, 409
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	12, 302, 360
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	48, 236, 312, 399, 425
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	2 cut(s)	208, 274
NlaIII	CATG	2 cut(s)	95, 400
PagI	TCATGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	124, 175, 313
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	274
SatI	GCNGC	3 cut(s)	123, 174, 312
Sau3AI	GATC	2 cut(s)	208, 274
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	134, 175, 259, 316, 329, 405, 417
Sse9I	AATT	3 cut(s)	12, 302, 360
SseBI	AGGCCT	1 cut(s)	388
StuI	AGGCCT	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	51, 217
TaqI	TCGA	3 cut(s)	53, 186, 288
TasI	AATT	3 cut(s)	12, 302, 360
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	3 cut(s)	72, 147, 172
TseI	GCWGC	3 cut(s)	122, 173, 311
TspDTI	ATGAA	2 cut(s)	17, 413
TspRI	CASTG	3 cut(s)	72, 147, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.