Rorug03G0236500

psbQ-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011108
Physical Location & Seq
Reverse (-)
21915065 .. 21916117
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0236500.1

Sequence Viewer

Length: 1053 bp
ATGGAAGACACAGTGATTGATTCACCCACGAGATCGAGCTCCGAGTCTTCTAGTTTTAGTCTTTACACATGTCCTCTTTGTTCTAGGGCTTTCCCAACCACTCGGGCCTTGGGAGGCCACCAAACTGCTCACCGCAAAGAAAAAAGTGAGCGTTTACTCCATATAATACGCCAAGCAGAAATCGACGAGCTGAAGTATGCTGCTGACAATGATGTGGTGCTGTCACCAGTACCAATCAGCTGGGCACCTCCAGCTACTGATGATCAAACATTTAAAGTGTACAACTTTATGCCAATGGGGAATGGGACTAGTCCAGTTCCAGGTTCAGGTTCAGAGAGTGAGCAAGGGTTAGAGTCCGGACTGGGGGTGGGGTCAAGTGGATGTTCAGAGAATAAGGCTTATGATGTAGACCAGAAGAAGAAGCAGAAGAAGCGCAAGTTTAAAGTGTACAGCTTTATGCCAATGGGGACTGAGACTAGTCCAGGTCCTGGTTCGGGTTCAGAGAGTGTGCAACGATTAGAGTCCGGACTGGGAGTGGGATCAACTGGATGTTCAGAGAATAAGGCTTATCATGTAGACCAGAAGAAGAAGCATAAAAAGCAGAAGTTTATGAACTTAAGTGGATGTTCAGAAATCAATGAGGCTTCTGATGAAGACCAGAAGAAGCTGAGCAAGTCTACGAAATTAAGTGAATGTTCAAAAAATAAGGTTTCTGATGCAGATAAGACGGAGAAGAAGAGCAAGTCTACGAATTTAAGTGAATGTTCAGAGAATAAGGCTTCTGATACAGACCAGAAGAAGCGGAAATATACGAAATTAAGTGAATGTTCAGAGATCAATAAGGGTTCTGACGCAGACCAGAAGAAGCGCAAGTCTGCGAACTTGAGTAGATGTTCCGAGAATAAGGCTTCTGATGCAGACCAGAACAAGAGCGAGTTTAGGAAATTGATGCCGAGTCCCGAGCTAACCATGGCAACAGGGGCTGCTCCGGATGTGTTGGTTCAAGTTTTGAGTACTGACTCTGATGAAAACGGGTGCACGGAGTACTACTAA

Protein Analysis

350

Amino Acids

38.21

Weight (kDa)

7.92

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 22 - 47 4.1e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01918
fragaria_vesca FvH4_1g27614
malus_domestica MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica Prupe.3G011900_v2.0.a1
pyrus_communis pycom09g19000 pycom17g27090
rosa_chinensis RchiOBHm_Chr3g0487781
rosa_laevigata RLG00000022972
rosa_multiflora Rmu_sc0005611.1_g000005
rosa_roxburghii Rroxscaffold_6G00394480
rosa_rugosa Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana Rw3G025240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 488
AccI GTMKAC 4 cut(s) 408, 576, 677, 746
AccIII TCCGGA 3 cut(s) 356, 524, 988
AciI CCGC 2 cut(s) 133, 802
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 5 cut(s) 231, 281, 449, 1015, 1046
AfiI CCNNNNNNNGG 5 cut(s) 320, 326, 363, 488, 494
AflII CTTAAG 1 cut(s) 616
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 699, 1004
AhlI ACTAGT 2 cut(s) 308, 476
AjnI CCWGG 3 cut(s) 319, 481, 487
AluBI AGCT 7 cut(s) 39, 190, 240, 254, 453, 667, 964
AluI AGCT 7 cut(s) 39, 190, 240, 254, 453, 667, 964
Alw21I GWGCWC 2 cut(s) 41, 1040
Alw26I GTCTC 1 cut(s) 467
Alw44I GTGCAC 1 cut(s) 1036
AlwI GGATC 1 cut(s) 547
AlwNI CAGNNNCTG 3 cut(s) 257, 488, 983
Ama87I CYCGRG 2 cut(s) 102, 959
Aor13HI TCCGGA 3 cut(s) 356, 524, 988
AoxI GGCC 2 cut(s) 105, 115
ApaLI GTGCAC 1 cut(s) 1036
ApeKI GCWGC 2 cut(s) 200, 983
ApoI RAATTY 1 cut(s) 751
AspLEI GCGC 2 cut(s) 435, 870
AspS9I GGNCC 2 cut(s) 105, 485
AsuHPI GGTGA 3 cut(s) 15, 122, 216
AvaI CYCGRG 2 cut(s) 102, 959
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 2 cut(s) 247, 1040
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 41
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 3 cut(s) 12, 39, 660
Bbv12I GWGCWC 2 cut(s) 41, 1040
BbvI GCAGC 2 cut(s) 187, 970
BciT130I CCWGG 3 cut(s) 321, 483, 489
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 467
BcuI ACTAGT 2 cut(s) 308, 476
BfaI CTAG 4 cut(s) 51, 84, 309, 477
BfrI CTTAAG 1 cut(s) 616
BisI GCNGC 2 cut(s) 201, 984
BlpI GCTNAGC 1 cut(s) 668
BlsI GCNGC 2 cut(s) 202, 985
BmcAI AGTACT 2 cut(s) 1015, 1046
Bme1390I CCNGG 3 cut(s) 321, 483, 489
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 2 cut(s) 102, 959
BmgT120I GGNCC 2 cut(s) 105, 485
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 321, 483, 489
BmrI ACTGGG 2 cut(s) 371, 539
BmsI GCATC 3 cut(s) 706, 904, 939
BmuI ACTGGG 2 cut(s) 371, 539
BpiI GAAGAC 3 cut(s) 12, 39, 660
BpmI CTGGAG 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 904
BsaJI CCNNGG 2 cut(s) 108, 969
BsaWI WCCGGW 3 cut(s) 356, 524, 988
Bsc4I CCNNNNNNNGG 5 cut(s) 320, 326, 363, 488, 494
Bse1I ACTGG 5 cut(s) 227, 314, 366, 534, 550
BseAI TCCGGA 3 cut(s) 356, 524, 988
BseBI CCWGG 3 cut(s) 321, 483, 489
BseDI CCNNGG 2 cut(s) 108, 969
BseGI GGATG 4 cut(s) 386, 554, 629, 997
BseLI CCNNNNNNNGG 5 cut(s) 320, 326, 363, 488, 494
BseMII CTCAG 2 cut(s) 462, 659
BseNI ACTGG 5 cut(s) 227, 314, 366, 534, 550
BseSI GKGCMC 2 cut(s) 247, 1040
BseXI GCAGC 2 cut(s) 187, 970
BseYI CCCAGC 1 cut(s) 240
BshFI GGCC 2 cut(s) 107, 117
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 2 cut(s) 41, 1040
BsiHKCI CYCGRG 2 cut(s) 102, 959
BsiSI CCGG 3 cut(s) 357, 525, 989
BslFI GGGAC 3 cut(s) 319, 481, 942
BslI CCNNNNNNNGG 5 cut(s) 320, 326, 363, 488, 494
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 3 cut(s) 319, 481, 942
BsnI GGCC 2 cut(s) 107, 117
BsoBI CYCGRG 2 cut(s) 102, 959
Bsp1286I GDGCHC 3 cut(s) 41, 247, 1040
Bsp13I TCCGGA 3 cut(s) 356, 524, 988
Bsp1407I TGTACA 2 cut(s) 279, 447
Bsp143I GATC 4 cut(s) 32, 262, 539, 834
Bsp1720I GCTNAGC 1 cut(s) 668
Bsp19I CCATGG 1 cut(s) 969
BspACI CCGC 2 cut(s) 133, 802
BspANI GGCC 2 cut(s) 107, 117
BspCNI CTCAG 2 cut(s) 463, 660
BspEI TCCGGA 3 cut(s) 356, 524, 988
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 616
BsrGI TGTACA 2 cut(s) 279, 447
BsrI ACTGG 5 cut(s) 227, 314, 366, 534, 550
BssECI CCNNGG 2 cut(s) 108, 969
BssMI GATC 4 cut(s) 32, 262, 539, 834
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 2 cut(s) 108, 969
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 321, 483, 489
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 731
BstAFI CTTAAG 1 cut(s) 616
BstAUI TGTACA 2 cut(s) 279, 447
BstDEI CTNAG 2 cut(s) 471, 668
BstDSI CCRYGG 1 cut(s) 969
BstF5I GGATG 4 cut(s) 386, 554, 629, 997
BstHHI GCGC 2 cut(s) 435, 870
BstKTI GATC 4 cut(s) 35, 265, 542, 837
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 4 cut(s) 32, 262, 539, 834
BstMWI GCNNNNNNNGC 5 cut(s) 251, 430, 598, 914, 980
BstNI CCWGG 3 cut(s) 321, 483, 489
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 3 cut(s) 319, 481, 487
BstSLI GKGCMC 2 cut(s) 247, 1040
BstV1I GCAGC 2 cut(s) 187, 970
BstV2I GAAGAC 3 cut(s) 12, 39, 660
BstXI CCANNNNNNTGG 1 cut(s) 240
BsuRI GGCC 2 cut(s) 107, 117
BtgI CCRYGG 1 cut(s) 969
BtsCI GGATG 4 cut(s) 386, 554, 629, 997
BtsIMutI CAGTG 1 cut(s) 18
CaiI CAGNNNCTG 3 cut(s) 257, 488, 983
CfoI GCGC 2 cut(s) 435, 870
Cfr13I GGNCC 2 cut(s) 105, 485
CseI GACGC 1 cut(s) 860
Csp6I GTAC 5 cut(s) 230, 280, 448, 1014, 1045
CviAII CATG 3 cut(s) 69, 572, 970
CviQI GTAC 5 cut(s) 230, 280, 448, 1014, 1045
DdeI CTNAG 2 cut(s) 471, 668
DpnI GATC 4 cut(s) 34, 264, 541, 836
DpnII GATC 4 cut(s) 32, 262, 539, 834
DraI TTTAAA 2 cut(s) 274, 442
Eam1104I CTCTTC 1 cut(s) 731
EarI CTCTTC 1 cut(s) 731
Ecl136II GAGCTC 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 108, 969
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 2 cut(s) 102, 959
EcoICRI GAGCTC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 3 cut(s) 319, 481, 487
EcoT14I CCWWGG 2 cut(s) 108, 969
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 2 cut(s) 108, 969
FaeI CATG 3 cut(s) 72, 575, 973
FaqI GGGAC 3 cut(s) 319, 481, 942
FatI CATG 3 cut(s) 68, 571, 969
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 4 cut(s) 408, 576, 677, 746
Fnu4HI GCNGC 2 cut(s) 201, 984
FokI GGATG 4 cut(s) 393, 561, 636, 1004
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 201, 984
FspBI CTAG 4 cut(s) 51, 84, 309, 477
GlaI GCGC 2 cut(s) 434, 869
GluI GCNGC 2 cut(s) 201, 984
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 2 cut(s) 107, 117
HapII CCGG 3 cut(s) 357, 525, 989
HgaI GACGC 1 cut(s) 860
HhaI GCGC 2 cut(s) 435, 870
Hin1II CATG 3 cut(s) 72, 575, 973
Hin6I GCGC 2 cut(s) 433, 868
HinP1I GCGC 2 cut(s) 433, 868
HinfI GANTC 6 cut(s) 20, 44, 353, 521, 955, 1019
HpaII CCGG 3 cut(s) 357, 525, 989
HphI GGTGA 3 cut(s) 15, 122, 216
Hpy166II GTNNAC 8 cut(s) 155, 280, 409, 448, 577, 678, 747, 1038
Hpy188III TCNNGA 4 cut(s) 357, 525, 959, 989
Hpy8I GTNNAC 8 cut(s) 155, 280, 409, 448, 577, 678, 747, 1038
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 511, 719, 917, 1038
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 430, 598, 914, 980
HpyF3I CTNAG 2 cut(s) 471, 668
Hsp92II CATG 3 cut(s) 72, 575, 973
HspAI GCGC 2 cut(s) 433, 868
Kpn2I TCCGGA 3 cut(s) 356, 524, 988
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 32, 262, 539, 834
LguI GCTCTTC 1 cut(s) 731
LmnI GCTCC 2 cut(s) 44, 991
Lsp1109I GCAGC 2 cut(s) 187, 970
LweI GCATC 3 cut(s) 706, 904, 939
MaeI CTAG 4 cut(s) 51, 84, 309, 477
MaeIII GTNAC 1 cut(s) 222
MalI GATC 4 cut(s) 34, 264, 541, 836
MboI GATC 4 cut(s) 32, 262, 539, 834
MhlI GDGCHC 3 cut(s) 41, 247, 1040
MluCI AATT 4 cut(s) 683, 751, 815, 944
MlyI GAGTC 5 cut(s) 53, 362, 530, 964, 1013
MnlI CCTC 4 cut(s) 84, 107, 258, 634
MroI TCCGGA 3 cut(s) 356, 524, 988
MseI TTAA 6 cut(s) 273, 441, 617, 686, 755, 818
MspA1I CMGCKG 1 cut(s) 240
MspCI CTTAAG 1 cut(s) 616
MspI CCGG 3 cut(s) 357, 525, 989
MspR9I CCNGG 3 cut(s) 321, 483, 489
MvaI CCWGG 3 cut(s) 321, 483, 489
MwoI GCNNNNNNNGC 5 cut(s) 251, 430, 598, 914, 980
NcoI CCATGG 1 cut(s) 969
NdeII GATC 4 cut(s) 32, 262, 539, 834
NlaIII CATG 3 cut(s) 72, 575, 973
NlaIV GGNNCC 1 cut(s) 246
NmeAIII GCCGAG 1 cut(s) 978
NmuCI GTSAC 1 cut(s) 222
NspI RCATGY 1 cut(s) 72
PciI ACATGT 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 731
PfeI GAWTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 488
PkrI GCNGC 2 cut(s) 202, 985
PleI GAGTC 5 cut(s) 52, 361, 529, 963, 1013
PpsI GAGTC 5 cut(s) 52, 361, 529, 963, 1013
PpuMI RGGWCCY 1 cut(s) 485
PscI ACATGT 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 485
Psp6I CCWGG 3 cut(s) 319, 481, 487
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 3 cut(s) 319, 481, 487
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 105, 485
PspPPI RGGWCCY 1 cut(s) 485
PstNI CAGNNNCTG 3 cut(s) 257, 488, 983
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 5 cut(s) 231, 281, 449, 1015, 1046
RsaNI GTAC 5 cut(s) 230, 280, 448, 1014, 1045
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 6 cut(s) 273, 441, 617, 686, 755, 818
SatI GCNGC 2 cut(s) 201, 984
Sau3AI GATC 4 cut(s) 32, 262, 539, 834
Sau96I GGNCC 2 cut(s) 105, 485
ScaI AGTACT 2 cut(s) 1015, 1046
SchI GAGTC 5 cut(s) 53, 362, 530, 964, 1013
ScrFI CCNGG 3 cut(s) 321, 483, 489
SduI GDGCHC 3 cut(s) 41, 247, 1040
SfaNI GCATC 3 cut(s) 706, 904, 939
SinI GGWCC 1 cut(s) 485
SmlI CTYRAG 2 cut(s) 616, 883
SmoI CTYRAG 2 cut(s) 616, 883
SpeI ACTAGT 2 cut(s) 308, 476
Sse9I AATT 4 cut(s) 683, 751, 815, 944
SsiI CCGC 2 cut(s) 133, 802
SspMI CTAG 4 cut(s) 51, 84, 309, 477
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 319, 481, 487
StyI CCWWGG 2 cut(s) 108, 969
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 35, 183
TasI AATT 4 cut(s) 683, 751, 815, 944
TatI WGTACW 4 cut(s) 279, 447, 1013, 1044
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 6 cut(s) 273, 441, 617, 686, 755, 818
Tru9I TTAA 6 cut(s) 273, 441, 617, 686, 755, 818
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 222
TseI GCWGC 2 cut(s) 200, 983
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 3 cut(s) 626, 666, 1041
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 616
VneI GTGCAC 1 cut(s) 1036
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 1 cut(s) 751
XceI RCATGY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmiI GTMKAC 4 cut(s) 408, 576, 677, 746
XspI CTAG 4 cut(s) 51, 84, 309, 477
ZrmI AGTACT 2 cut(s) 1015, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.