Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Reverse (-)

19280834 .. 19281853

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27614.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGGGTAGCGATGCTTCAAAACAACCCAATGCACTTCAATCCTACATTTTCCTGCTCTATGAAACCCTCCTTTCAGTTCAGAGAGAAGCCACTCAAGGTTTCTGATATTAACATGAATAGAAGAGTAGGAGCAATAGCAGCATTAAGCCTAGTACTGTTAGCAAAAGATTCATTTTTCACTAAACTCGCATATGGGTTCGACTTTCTACTGGTGGCACCTGATCAGACAATTGAAGAGGCAGAGAGTGGAATCATTGGACACGCACAAGCTTTATTGCAAGTGAAACAACTGATAGAGTCAGAGTCATGGGGGCAACTACAAACAGCAGTCCGGAAGAGTTCGCCATTGTTGAAGCAGGACATTTATACCATTATTCAACAAAAACCTGGAAATGAGAGACCCCTATTGAGGAAACTTTATTCCAATCTCTTCAACAATGTTACAAGACTTGATTATGCAGCAAGGGACAGAGATGCCTCACGGATTCGTGAATGCTATGAGAACATTGTGCTGTTTCTTAATGAAGTTTTATCTAGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

182

Amino Acids

20.71

Weight (kDa)

9.33

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	76 - 181	2.8e-17	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccIII	TCCGGA	1 cut(s)	333
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	411
AgsI	TTSAA	6 cut(s)	20, 40, 236, 355, 380, 436
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	394
Aor13HI	TCCGGA	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	140, 461
BanI	GGYRCC	1 cut(s)	217
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	152, 473
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	152, 537
BfmI	CTRYAG	1 cut(s)	542
BisI	GCNGC	2 cut(s)	141, 462
BlsI	GCNGC	2 cut(s)	142, 463
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	3, 466
BpuEI	CTTGAG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	152, 473
BshNI	GGYRCC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	500
Bso31I	GGTCTC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	4 cut(s)	118, 231, 332, 437
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	542
BstV1I	GCAGC	2 cut(s)	152, 473
BtgZI	GCGATG	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	115, 309
CviJI	RGCY	3 cut(s)	91, 150, 272
CviKI_1	RGCY	3 cut(s)	91, 150, 272
CviQI	GTAC	1 cut(s)	155
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eam1104I	CTCTTC	4 cut(s)	118, 231, 332, 437
EarI	CTCTTC	4 cut(s)	118, 231, 332, 437
Eco31I	GGTCTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	118, 312
FaiI	YATR	9 cut(s)	62, 116, 193, 195, 310, 369, 459, 501, 544
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	2 cut(s)	114, 308
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	141, 462
Fsp4HI	GCNGC	2 cut(s)	141, 462
FspBI	CTAG	2 cut(s)	152, 537
GluI	GCNGC	2 cut(s)	141, 462
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	2 cut(s)	118, 312
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	5 cut(s)	170, 252, 299, 305, 487
HpaII	CCGG	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	83, 106, 228, 304
Hpy188III	TCNNGA	3 cut(s)	334, 491, 537
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	34, 280, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	118, 312
Kpn2I	TCCGGA	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	67, 197, 234, 344, 347, 375, 402
Lsp1109I	GCAGC	2 cut(s)	152, 473
LweI	GCATC	2 cut(s)	3, 466
MaeI	CTAG	2 cut(s)	152, 537
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	135, 248, 349, 424
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	308, 314
MnlI	CCTC	4 cut(s)	79, 232, 405, 490
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	3 cut(s)	111, 146, 522
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	118, 312
NlaIV	GGNNCC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	3 cut(s)	170, 252, 487
PkrI	GCNGC	2 cut(s)	142, 463
PleI	GAGTC	2 cut(s)	307, 313
PpsI	GAGTC	2 cut(s)	307, 313
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	219
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	111, 146, 522
SatI	GCNGC	2 cut(s)	141, 462
Sau3AI	GATC	1 cut(s)	223
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	2 cut(s)	308, 314
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	4 cut(s)	102, 223, 274, 391
SfaNI	GCATC	2 cut(s)	3, 466
SfcI	CTRYAG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	231
SspMI	CTAG	2 cut(s)	152, 537
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	231
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	170, 252, 487
Tru1I	TTAA	3 cut(s)	111, 146, 522
Tru9I	TTAA	3 cut(s)	111, 146, 522
TseI	GCWGC	2 cut(s)	140, 461
TspDTI	ATGAA	4 cut(s)	77, 131, 162, 540
TspGWI	ACGGA	1 cut(s)	499
XbaI	TCTAGA	1 cut(s)	536
XspI	CTAG	2 cut(s)	152, 537
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.