Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Reverse (-)

15226703 .. 15228362

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTGTTTTCTTCAACTCTTAATAGAGCGACCCAACTGTGATATGCTTTTGCAGGAGATATCATTGACAATGAGGGCAGCAATCCTACAAAACAACCTAATGCACTTTAATCCTACATTTTCCTGCTGTCTGAAACCCTCATCTCAGTTTAGAGAGATGCGACTCAAGGATTTTGATATTAATATCAATAGAAGGATAGGAGCAATAGCAGCATTAAGCCTAGTATTGTTAGCAAAAGATTCATTTTCTACTAAACTTGCATATGGGTTCGACTTTCAACTGGTGGCACCTGATCAGACAATTGAAGAGGCAGAGAGTGGTATCATTGGACACGCACAAGCTTTATTACAAGTGAAAGAACTGATAGAGTCAGAGTCATGGGGACAAGTACAAACAGCTGTCCGGAAGAGCTCGCCGTTCTTGAAGCAGGACATTTATACCATTATTCAACAAAAACCTGGAAATGAGAGGCCCCTATTGAGGAAACTGTATTCCAATCTCTTCAACAATGTTACAAGACTTGATTATGCAGCAAGGGACAGAGATGCATCACGAATTCGTGAATGCTATGAGAATATTGTGATGGTTCTTAATGAAGTTTTATCTAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

204

Amino Acids

23.4

Weight (kDa)

7.61

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	99 - 204	4e-19	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AccIII	TCCGGA	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	555
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	6 cut(s)	14, 278, 305, 424, 449, 505
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	3 cut(s)	341, 398, 411
AluI	AGCT	3 cut(s)	341, 398, 411
Alw21I	GWGCWC	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	77, 209, 530
ApoI	RAATTY	1 cut(s)	555
AseI	ATTAAT	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	89, 221, 542
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	2 cut(s)	221, 606
BisI	GCNGC	3 cut(s)	78, 210, 531
BlsI	GCNGC	3 cut(s)	79, 211, 532
Bme1390I	CCNGG	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	2 cut(s)	288, 473
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	3 cut(s)	147, 535, 557
BpuEI	CTTGAG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	89, 221, 542
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	2 cut(s)	396, 551
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmFI	GGGAC	2 cut(s)	396, 551
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	288, 473
BspQI	GCTCTTC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	38, 489
Bst6I	CTCTTC	3 cut(s)	300, 401, 506
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	89, 221, 542
BsuRI	GGCC	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	1 cut(s)	378
CviJI	RGCY	5 cut(s)	219, 341, 398, 411, 472
CviKI_1	RGCY	5 cut(s)	219, 341, 398, 411, 472
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	3 cut(s)	300, 401, 506
EarI	CTCTTC	3 cut(s)	300, 401, 506
Ecl136II	GAGCTC	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	413
FaeI	CATG	1 cut(s)	381
FaiI	YATR	8 cut(s)	44, 262, 264, 379, 438, 528, 570, 613
FaqI	GGGAC	2 cut(s)	396, 551
FatI	CATG	1 cut(s)	377
FauNDI	CATATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	78, 210, 531
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	3 cut(s)	78, 210, 531
FspBI	CTAG	2 cut(s)	221, 606
GluI	GCNGC	3 cut(s)	78, 210, 531
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	4 cut(s)	162, 239, 368, 374
HpaII	CCGG	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	132, 297, 373
Hpy188III	TCNNGA	5 cut(s)	403, 421, 552, 560, 606
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	38, 489
HpyCH4V	TGCA	5 cut(s)	52, 103, 260, 530, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	381
Kpn2I	TCCGGA	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	8 cut(s)	38, 136, 266, 303, 413, 416, 444, 471
Lsp1109I	GCAGC	3 cut(s)	89, 221, 542
LweI	GCATC	3 cut(s)	147, 535, 557
MaeI	CTAG	2 cut(s)	221, 606
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	3 cut(s)	317, 418, 493
MfeI	CAATTG	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	2 cut(s)	300, 555
MlyI	GAGTC	3 cut(s)	156, 377, 383
MnlI	CCTC	5 cut(s)	66, 148, 301, 462, 474
Mph1103I	ATGCAT	1 cut(s)	550
MroI	TCCGGA	1 cut(s)	402
MseI	TTAA	5 cut(s)	20, 108, 180, 215, 591
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	381
NlaIV	GGNNCC	2 cut(s)	288, 473
NsiI	ATGCAT	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	401
PctI	GAATGC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	79, 211, 532
PleI	GAGTC	3 cut(s)	156, 376, 382
PpsI	GAGTC	3 cut(s)	156, 376, 382
PshBI	ATTAAT	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	2 cut(s)	288, 473
PspPI	GGNCC	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	5 cut(s)	20, 108, 180, 215, 591
SatI	GCNGC	3 cut(s)	78, 210, 531
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	3 cut(s)	156, 377, 383
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	6 cut(s)	99, 292, 343, 400, 413, 460
SfaNI	GCATC	3 cut(s)	147, 535, 557
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	300, 555
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	2 cut(s)	221, 606
SstI	GAGCTC	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	38, 489
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	300, 555
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	5 cut(s)	20, 108, 180, 215, 591
Tru9I	TTAA	5 cut(s)	20, 108, 180, 215, 591
TseI	GCWGC	3 cut(s)	77, 209, 530
TspDTI	ATGAA	2 cut(s)	231, 609
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	605
XspI	CTAG	2 cut(s)	221, 606
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.