Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Forward (+)

33362760 .. 33363986

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG284600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCGACTCAAGGATTTTGATATTAATATCAATAGAAGAATAGGAGCAATAGCGGCATTAAGCCTAGTATTGTTAGCAAAAGATTCAATTTCTACTAAACTTGCATATGGGTTCGACTTTCAACTGGTGGCACCTGATCAGACAATTGAAGAGGCAGAGAGTGGTATCATTGGACATGCACAAGCTTTATTACAAGTGAAAGAACTGATAGAGTCAGAGTCATGGGGACAAGTGCAAACAGCTGTCCGGAAGAGCTCGCCGTTCTTGAAGCAGGACATTTATACCATTATTCAACAAAAACCTGGAAATGAGAGGCCCCTATTGAGGAAACTGTATTCCAATCTCTTCAACAATGTTACAAGACTTGATTATGCAGCAAGGGACAGAGATGCATCACGAATTCGTGAATGCTATGAGAATATTGTGATGCATTGCAGGGTCGTCCTAGGGCCCTTCTGTTACATCCAGGCTGCTGATTTTATAGAAAGCATCTTGCAAGAAAAATGGTCTCACATGAAAATTAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

176

Amino Acids

20.18

Weight (kDa)

8.41

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	47 - 140	1.1e-16	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	6 cut(s)	87, 122, 149, 268, 293, 349
AjnI	CCWGG	2 cut(s)	301, 465
AluBI	AGCT	3 cut(s)	185, 242, 255
AluI	AGCT	3 cut(s)	185, 242, 255
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	513
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	2 cut(s)	314, 449
ApaI	GGGCCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	374, 470
ApoI	RAATTY	1 cut(s)	399
AseI	ATTAAT	1 cut(s)	24
AspA2I	CCTAGG	1 cut(s)	445
AspS9I	GGNCC	3 cut(s)	315, 449, 450
AvrII	CCTAGG	1 cut(s)	445
BaeGI	GKGCMC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	257, 453
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	386, 457
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	303, 467
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	2 cut(s)	65, 446
BisI	GCNGC	3 cut(s)	54, 375, 471
BlnI	CCTAGG	1 cut(s)	445
BlsI	GCNGC	3 cut(s)	55, 376, 472
Bme1390I	CCNGG	2 cut(s)	303, 467
BmgT120I	GGNCC	3 cut(s)	315, 449, 450
BmiI	GGNNCC	3 cut(s)	132, 317, 451
BmrFI	CCNGG	2 cut(s)	303, 467
BmsI	GCATC	4 cut(s)	379, 401, 417, 498
BsaI	GGTCTC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	430
BseAI	TCCGGA	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	303, 467
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	386, 457
BshFI	GGCC	2 cut(s)	316, 451
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	2 cut(s)	240, 395
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	2 cut(s)	240, 395
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	2 cut(s)	316, 451
Bso31I	GGTCTC	1 cut(s)	513
Bsp120I	GGGCCC	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	257, 453
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	316, 451
BspEI	TCCGGA	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	132, 317, 451
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	303, 467
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	3 cut(s)	144, 245, 350
BstC8I	GCNNGC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	462
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	303, 467
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	301, 465
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	386, 457
BsuRI	GGCC	2 cut(s)	316, 451
BtsCI	GGATG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	315, 449, 450
CviAII	CATG	3 cut(s)	176, 222, 514
CviJI	RGCY	7 cut(s)	63, 185, 242, 255, 316, 451, 470
CviKI_1	RGCY	7 cut(s)	63, 185, 242, 255, 316, 451, 470
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	144, 245, 350
EarI	CTCTTC	3 cut(s)	144, 245, 350
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	257, 453
Eco31I	GGTCTC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	3 cut(s)	315, 449, 450
EcoRI	GAATTC	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	301, 465
EcoT14I	CCWWGG	1 cut(s)	445
EcoT22I	ATGCAT	2 cut(s)	394, 432
EcoT38I	GRGCYC	2 cut(s)	257, 453
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	3 cut(s)	179, 225, 517
FaiI	YATR	9 cut(s)	106, 108, 177, 223, 282, 372, 414, 482, 515
FaqI	GGGAC	2 cut(s)	240, 395
FatI	CATG	3 cut(s)	175, 221, 513
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	54, 375, 471
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	2 cut(s)	257, 453
Fsp4HI	GCNGC	3 cut(s)	54, 375, 471
FspBI	CTAG	2 cut(s)	65, 446
GluI	GCNGC	3 cut(s)	54, 375, 471
HaeIII	GGCC	2 cut(s)	316, 451
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	3 cut(s)	179, 225, 517
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	4 cut(s)	6, 83, 212, 218
HpaII	CCGG	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	141, 217
Hpy188III	TCNNGA	4 cut(s)	247, 265, 396, 404
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	8 cut(s)	104, 179, 235, 374, 392, 430, 435, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	179, 225, 517
Kpn2I	TCCGGA	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	9 cut(s)	110, 147, 257, 260, 288, 315, 421, 452, 479
Lsp1109I	GCAGC	2 cut(s)	386, 457
LweI	GCATC	4 cut(s)	379, 401, 417, 498
MaeI	CTAG	2 cut(s)	65, 446
MaeIII	GTNAC	2 cut(s)	355, 458
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	4 cut(s)	48, 161, 262, 337
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	257, 453
MluCI	AATT	4 cut(s)	87, 144, 399, 519
MlyI	GAGTC	2 cut(s)	221, 227
MnlI	CCTC	3 cut(s)	145, 306, 318
Mph1103I	ATGCAT	2 cut(s)	394, 432
MroI	TCCGGA	1 cut(s)	246
MseI	TTAA	3 cut(s)	24, 59, 522
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	303, 467
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	413
MvaI	CCWGG	2 cut(s)	303, 467
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	179, 225, 517
NlaIV	GGNNCC	3 cut(s)	132, 317, 451
NsiI	ATGCAT	2 cut(s)	394, 432
NspI	RCATGY	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	55, 376, 472
PleI	GAGTC	2 cut(s)	220, 226
PpsI	GAGTC	2 cut(s)	220, 226
PshBI	ATTAAT	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	301, 465
PspGI	CCWGG	2 cut(s)	301, 465
PspN4I	GGNNCC	3 cut(s)	132, 317, 451
PspOMI	GGGCCC	1 cut(s)	449
PspPI	GGNCC	3 cut(s)	315, 449, 450
PvuII	CAGCTG	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	24, 59, 522
SatI	GCNGC	3 cut(s)	54, 375, 471
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	3 cut(s)	315, 449, 450
SchI	GAGTC	2 cut(s)	221, 227
ScrFI	CCNGG	2 cut(s)	303, 467
SduI	GDGCHC	2 cut(s)	257, 453
SetI	ASST	5 cut(s)	136, 187, 244, 257, 304
SfaNI	GCATC	4 cut(s)	379, 401, 417, 498
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	4 cut(s)	87, 144, 399, 519
SsiI	CCGC	1 cut(s)	53
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	2 cut(s)	65, 446
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	301, 465
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	114
TasI	AATT	4 cut(s)	87, 144, 399, 519
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	24, 59, 522
Tru9I	TTAA	3 cut(s)	24, 59, 522
TseI	GCWGC	2 cut(s)	374, 470
TspDTI	ATGAA	1 cut(s)	530
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	445
XspI	CTAG	2 cut(s)	65, 446
Zsp2I	ATGCAT	2 cut(s)	394, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.