RchiOBHm_Chr3g0487781

psbQ-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011108
Physical Location & Seq
Forward (+)
35098364 .. 35100744
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45220

Sequence Viewer

Length: 546 bp
ATGAGGGCAGCAATCCTACAAAACAACCTAATGCACTTTAATCCTACATTTTCCTGCTGTCTGAAACCCTCATTTCAGTTAAGAGAGATGCGACTCAAGGATTTTGATATTAATATCAATAGAAGAATAGGAGCAATAGCGGCATTAAGCCTAGTATTGTTAGCAAAAGATTCAATTTCTACTAAACTTGCATATGGGTTCGACTTTCAACTGGTGGCACCTGATCAGACAATTGAAGAGGCAGAGAGTGGTATCATTGGACATGCACAAGCTTTATTACAAGTGAAAGAACTGATAGAGTCAGAGTCATGGGGACAAGTGCAAACAGCTGTCCGGAAGAGCTCGCCGTTCTTGAAGCAGGACATTTATACCATTATTCAACAAAAACCTGGAAATGAGAGGCCCCTATTGAGGAAACTGTATTCCAATCTCTTCAACAATGTTACAAGACTTGATTATGCAGCAAGGGACAGAGATGCATCACGAATTCGTGAATGCTATGAGAATATTGTGATGGTTCTTAATGAAGTTTTATCTAGACTATAA

Protein Analysis

181

Amino Acids

20.69

Weight (kDa)

8.81

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 76 - 181 2.8e-19 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01918
fragaria_vesca FvH4_1g27614
malus_domestica MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica Prupe.3G011900_v2.0.a1
pyrus_communis pycom09g19000 pycom17g27090
rosa_chinensis RchiOBHm_Chr3g0487781
rosa_laevigata RLG00000022972
rosa_multiflora Rmu_sc0005611.1_g000005
rosa_roxburghii Rroxscaffold_6G00394480
rosa_rugosa Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana Rw3G025240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 486
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 6 cut(s) 174, 209, 236, 355, 380, 436
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 3 cut(s) 272, 329, 342
AluI AGCT 3 cut(s) 272, 329, 342
Alw21I GWGCWC 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 333
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 8, 461
ApoI RAATTY 1 cut(s) 486
AseI ATTAAT 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 402
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 20, 473
BccI CCATC 1 cut(s) 508
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 390
BclI TGATCA 1 cut(s) 223
BfaI CTAG 2 cut(s) 152, 537
BisI GCNGC 3 cut(s) 9, 141, 462
BlsI GCNGC 3 cut(s) 10, 142, 463
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 2 cut(s) 219, 404
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 3 cut(s) 78, 466, 488
BpuEI CTTGAG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 333
BseBI CCWGG 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 20, 473
BshFI GGCC 1 cut(s) 403
BshNI GGYRCC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 2 cut(s) 327, 482
BslI CCNNNNNNNGG 1 cut(s) 411
BsmFI GGGAC 2 cut(s) 327, 482
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 333
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 403
BspEI TCCGGA 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 219, 404
BspQI GCTCTTC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 216
BssMI GATC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 420
Bst6I CTCTTC 3 cut(s) 231, 332, 437
BstC8I GCNNGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 20, 473
BsuRI GGCC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 402
CviAII CATG 2 cut(s) 263, 309
CviJI RGCY 5 cut(s) 150, 272, 329, 342, 403
CviKI_1 RGCY 5 cut(s) 150, 272, 329, 342, 403
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 3 cut(s) 231, 332, 437
EarI CTCTTC 3 cut(s) 231, 332, 437
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 344
FaeI CATG 2 cut(s) 266, 312
FaiI YATR 8 cut(s) 193, 195, 264, 310, 369, 459, 501, 544
FaqI GGGAC 2 cut(s) 327, 482
FatI CATG 2 cut(s) 262, 308
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 9, 141, 462
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 9, 141, 462
FspBI CTAG 2 cut(s) 152, 537
GluI GCNGC 3 cut(s) 9, 141, 462
HaeIII GGCC 1 cut(s) 403
HapII CCGG 1 cut(s) 334
Hin1II CATG 2 cut(s) 266, 312
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 4 cut(s) 93, 170, 299, 305
HpaII CCGG 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 63, 228, 304
Hpy188III TCNNGA 5 cut(s) 334, 352, 483, 491, 537
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4V TGCA 6 cut(s) 34, 191, 266, 322, 461, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 266, 312
Kpn2I TCCGGA 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 7 cut(s) 67, 197, 234, 344, 347, 375, 402
Lsp1109I GCAGC 2 cut(s) 20, 473
LweI GCATC 3 cut(s) 78, 466, 488
MaeI CTAG 2 cut(s) 152, 537
MaeIII GTNAC 1 cut(s) 442
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 4 cut(s) 135, 248, 349, 424
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 3 cut(s) 174, 231, 486
MlyI GAGTC 3 cut(s) 87, 308, 314
MnlI CCTC 4 cut(s) 79, 232, 393, 405
Mph1103I ATGCAT 1 cut(s) 481
MroI TCCGGA 1 cut(s) 333
MseI TTAA 5 cut(s) 39, 80, 111, 146, 522
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 266, 312
NlaIV GGNNCC 2 cut(s) 219, 404
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 332
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 3 cut(s) 10, 142, 463
PleI GAGTC 3 cut(s) 87, 307, 313
PpsI GAGTC 3 cut(s) 87, 307, 313
PshBI ATTAAT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 219, 404
PspPI GGNCC 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 332
SaqAI TTAA 5 cut(s) 39, 80, 111, 146, 522
SatI GCNGC 3 cut(s) 9, 141, 462
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 3 cut(s) 87, 308, 314
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 344
SetI ASST 6 cut(s) 30, 223, 274, 331, 344, 391
SfaNI GCATC 3 cut(s) 78, 466, 488
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 174, 231, 486
SsiI CCGC 1 cut(s) 140
SspI AATATT 1 cut(s) 508
SspMI CTAG 2 cut(s) 152, 537
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 174, 231, 486
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 5 cut(s) 39, 80, 111, 146, 522
Tru9I TTAA 5 cut(s) 39, 80, 111, 146, 522
TseI GCWGC 2 cut(s) 8, 461
TspDTI ATGAA 1 cut(s) 540
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 486
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 1 cut(s) 266
XspI CTAG 2 cut(s) 152, 537
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.