Rw3G025240

psbQ-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011108
Physical Location & Seq
Forward (+)
33366368 .. 33368545
2178 bp
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UTR
Exon/CDS
Intron
Rw3G025240.1

Sequence Viewer

Length: 573 bp
ATGCTTTTGCAGGAGATATCTTTGACAATGAGGGCAGCAATCCTACAAAACAACCTAATGCACTTTAATCCTACATTTTCCTGCTGTCTGAAACCCTCATTTCAGTTTAGAGAGATGCGACTCAAGGATTTTGATATTAATATCAATAGAAGAATAGGAGCAATAGCAGCATTAAGCCTAGTATTGTTAGCAAAAGATTCAATTTCTACTAAACTTGCATATGGGTTCGACTTTCAACTGGTGGCACCTGATCAGACAATTGAAGAGGCAGAGAGTGGTATCATTGGACATGCACAAGCTTTATTACAAGTGAAAGAACTGATAGAGTCAGAGTCATGGGGACAAGTACAAACAGCTGTCCGGAAGAGCTCGCCGTTCTTGAAGCAGGACATTTATACTATTATTCAACAAAAACCTGGAAATGAGAGGCCCCTATTGAGGAAACTGTATTCCAATCTCTTCAACAATGTTACAAGACTTGATTATGCAGCAAGGGACAGAGATGCATCACGAATTCGTGAATGCTATGAGAATATTGTGATGGTTCTTAATGAAGTTTTATCTAGACTATAA

Protein Analysis

190

Amino Acids

21.75

Weight (kDa)

8.45

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 85 - 190 3.3e-19 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01918
fragaria_vesca FvH4_1g27614
malus_domestica MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica Prupe.3G011900_v2.0.a1
pyrus_communis pycom09g19000 pycom17g27090
rosa_chinensis RchiOBHm_Chr3g0487781
rosa_laevigata RLG00000022972
rosa_multiflora Rmu_sc0005611.1_g000005
rosa_roxburghii Rroxscaffold_6G00394480
rosa_rugosa Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana Rw3G025240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 360
AcsI RAATTY 1 cut(s) 513
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 6 cut(s) 201, 236, 263, 382, 407, 463
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 3 cut(s) 299, 356, 369
AluI AGCT 3 cut(s) 299, 356, 369
Alw21I GWGCWC 1 cut(s) 371
Aor13HI TCCGGA 1 cut(s) 360
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 3 cut(s) 35, 167, 488
ApoI RAATTY 1 cut(s) 513
AseI ATTAAT 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 429
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 371
BbvI GCAGC 3 cut(s) 47, 179, 500
BccI CCATC 1 cut(s) 535
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 1 cut(s) 250
BfaI CTAG 2 cut(s) 179, 564
BisI GCNGC 3 cut(s) 36, 168, 489
BlsI GCNGC 3 cut(s) 37, 169, 490
Bme1390I CCNGG 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 2 cut(s) 246, 431
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 105, 493, 515
BpuEI CTTGAG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse1I ACTGG 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 360
BseBI CCWGG 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 3 cut(s) 47, 179, 500
BshFI GGCC 1 cut(s) 430
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 2 cut(s) 354, 509
BslI CCNNNNNNNGG 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 354, 509
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 371
Bsp13I TCCGGA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 1 cut(s) 430
BspEI TCCGGA 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 246, 431
BspQI GCTCTTC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 243
BssMI GATC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 3 cut(s) 258, 359, 464
BstC8I GCNNGC 1 cut(s) 371
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 415
BstV1I GCAGC 3 cut(s) 47, 179, 500
BsuRI GGCC 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 290, 336
CviJI RGCY 5 cut(s) 177, 299, 356, 369, 430
CviKI_1 RGCY 5 cut(s) 177, 299, 356, 369, 430
CviQI GTAC 1 cut(s) 347
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 3 cut(s) 258, 359, 464
EarI CTCTTC 3 cut(s) 258, 359, 464
Ecl136II GAGCTC 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 371
Eco32I GATATC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 415
EcoRV GATATC 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 371
FaeI CATG 2 cut(s) 293, 339
FaiI YATR 8 cut(s) 220, 222, 291, 337, 396, 486, 528, 571
FaqI GGGAC 2 cut(s) 354, 509
FatI CATG 2 cut(s) 289, 335
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 36, 168, 489
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 3 cut(s) 36, 168, 489
FspBI CTAG 2 cut(s) 179, 564
GluI GCNGC 3 cut(s) 36, 168, 489
HaeIII GGCC 1 cut(s) 430
HapII CCGG 1 cut(s) 361
Hin1II CATG 2 cut(s) 293, 339
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 4 cut(s) 120, 197, 326, 332
HpaII CCGG 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 90, 255, 331
Hpy188III TCNNGA 5 cut(s) 361, 379, 510, 518, 564
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4V TGCA 6 cut(s) 10, 61, 218, 293, 488, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 293, 339
Kpn2I TCCGGA 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 7 cut(s) 94, 224, 261, 371, 374, 402, 429
Lsp1109I GCAGC 3 cut(s) 47, 179, 500
LweI GCATC 3 cut(s) 105, 493, 515
MaeI CTAG 2 cut(s) 179, 564
MaeIII GTNAC 1 cut(s) 469
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 4 cut(s) 162, 275, 376, 451
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 3 cut(s) 201, 258, 513
MlyI GAGTC 3 cut(s) 114, 335, 341
MnlI CCTC 5 cut(s) 24, 106, 259, 420, 432
Mph1103I ATGCAT 1 cut(s) 508
MroI TCCGGA 1 cut(s) 360
MseI TTAA 4 cut(s) 66, 138, 173, 549
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 417
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 293, 339
NlaIV GGNNCC 2 cut(s) 246, 431
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 3 cut(s) 37, 169, 490
PleI GAGTC 3 cut(s) 114, 334, 340
PpsI GAGTC 3 cut(s) 114, 334, 340
PshBI ATTAAT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 246, 431
PspPI GGNCC 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SacI GAGCTC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 4 cut(s) 66, 138, 173, 549
SatI GCNGC 3 cut(s) 36, 168, 489
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 3 cut(s) 114, 335, 341
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 1 cut(s) 371
SetI ASST 6 cut(s) 57, 250, 301, 358, 371, 418
SfaNI GCATC 3 cut(s) 105, 493, 515
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 3 cut(s) 201, 258, 513
SspI AATATT 1 cut(s) 535
SspMI CTAG 2 cut(s) 179, 564
SstI GAGCTC 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 201, 258, 513
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 4 cut(s) 66, 138, 173, 549
Tru9I TTAA 4 cut(s) 66, 138, 173, 549
TseI GCWGC 3 cut(s) 35, 167, 488
TspDTI ATGAA 1 cut(s) 567
VspI ATTAAT 1 cut(s) 138
XapI RAATTY 1 cut(s) 513
XbaI TCTAGA 1 cut(s) 563
XceI RCATGY 1 cut(s) 293
XspI CTAG 2 cut(s) 179, 564
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.