Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011108

Physical Location & Seq

Genomic Coordinates Forward (+)

21929404 .. 21930417

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0236600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAACTCCAAGGATACTTGCTTGGAAATCCAGTTTCAGATTCTTTTATTGATGTAAATGAGAGAATCCCATATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGACTATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATTGTCTTCTACAAATAAATCTTGCACAAATTTTGGAACCCCAATGTGCTTTTGCATCTGGTAGAACAACTGAGTTGGAGTGGGATCTTAGAGCTCGAGAAGCAAGTATTATGGATTACCTCCTTTCAGAGTCTAAGCTACCTGAATTGCATTGCCGGGTAATAACCATTCCTCTGTTTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009055 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0050896 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbQ

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

4.68

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 91	1.1e-12	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0011108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01918
fragaria_vesca	FvH4_1g27614
malus_domestica	MD09G1282000.v1.1 MD09G1282100.v1.1
prunus_persica	Prupe.3G011900_v2.0.a1
pyrus_communis	pycom09g19000 pycom17g27090
rosa_chinensis	RchiOBHm_Chr3g0487781
rosa_laevigata	RLG00000022972
rosa_multiflora	Rmu_sc0005611.1_g000005
rosa_roxburghii	Rroxscaffold_6G00394480
rosa_rugosa	Rorug03G0236500 Rorug03G0236600 Rorug03G0236700 Rorug03G0236800
rosa_samantha	Rh3AG284600 Rh3BG321400 Rh3CG319800 Rh3DG318400
rosa_wichuraiana	Rw3G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	228
AdeI	CACNNNGTG	2 cut(s)	85, 173
AgsI	TTSAA	1 cut(s)	188
AluBI	AGCT	2 cut(s)	293, 337
AluI	AGCT	2 cut(s)	293, 337
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpuMI	CCSGG	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	291
BspQI	GCTCTTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	270, 287, 333
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	3 cut(s)	116, 293, 337
CviKI_1	RGCY	3 cut(s)	116, 293, 337
DdeI	CTNAG	3 cut(s)	270, 287, 333
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DraIII	CACNNNGTG	2 cut(s)	85, 173
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	387
FaiI	YATR	6 cut(s)	73, 75, 111, 144, 311, 385
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	383
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HapII	CCGG	1 cut(s)	355
Hin1II	CATG	1 cut(s)	387
HinfI	GANTC	3 cut(s)	41, 66, 329
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	40, 100, 328
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	79
HpyCH4V	TGCA	5 cut(s)	4, 132, 224, 254, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	270, 287, 333
Hsp92II	CATG	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	283
LguI	GCTCTTC	1 cut(s)	189
LpnPI	CCDG	4 cut(s)	45, 243, 354, 368
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	87, 175
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	176, 197
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	4 cut(s)	127, 192, 228, 344
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	106, 329, 381
MseI	TTAA	2 cut(s)	159, 195
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	87
PaeR7I	CTCGAG	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	41, 66
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	159, 195
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	295, 321, 339, 343
SfaNI	GCATC	1 cut(s)	263
Sfr274I	CTCGAG	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	4 cut(s)	127, 192, 228, 344
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	10
TaqI	TCGA	1 cut(s)	295
TasI	AATT	4 cut(s)	127, 192, 228, 344
TfiI	GAWTC	2 cut(s)	41, 66
Tru1I	TTAA	2 cut(s)	159, 195
Tru9I	TTAA	2 cut(s)	159, 195
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	87
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	228
XhoI	CTCGAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.