Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Forward (+)

1129229 .. 1131838

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGAAGAGGGAAAGTTGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACTTTTGCAAAGAGAAGAAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGATGCTGAGATTGCTCTTCTCATTTTCTCTAACCGTGGCAAGCTCTACGAATTCTGCAGCAGCCCTAGTGGTATGGCGAGGACGGTTGATAAGTATAGAAAACATAGTTATGCAACAATGGATCCAAATCAATCAGCTAAAGACTTGCAGGATAAGTATCAAGACTACTTGAAGCTTAAATCAAGAGTTGAGATCCTTCAACATTCACAAAGGCATTTGCTAGGTGAAGAGCTATCCGAGATGGATGTGAATGAGCTTGAGCATCTCGAACGCCAAGTAGATGCATCACTAAGACAAATAAGATCTACCAAGGCTCGGTCTATGCTTGATCAACTATCTGACCTCAAAACTAAGGAGGAAATGTTATTGGAAACCAATAGAGATCTTAGGAGAAAGTTGGAGGACAGTGATGCAGCACTTACTCAATCGTTTTGGGGAAGTTCTGCTGCAGAACAACAACAACAACATCAACAACAGCAACAAGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGCAGGTTTCTTCAAGCCTCTACAAGGCAATGTAGCATTGCAAATGAGCAGTCATTACAATCACAATCCTGCAAATGCAACCAACTCTGCAACAACATCACAGAATGTTAATGGATTCTTCCCTGGATGGATGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010074 GO:0010076 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

258

Amino Acids

29.57

Weight (kDa)

8.94

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	9.8e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 173	5.9e-24	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	632
AclWI	GGATC	3 cut(s)	233, 246, 304
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	432, 662
AgsI	TTSAA	3 cut(s)	289, 317, 652
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	8 cut(s)	22, 103, 160, 254, 292, 349, 373, 609
AluI	AGCT	8 cut(s)	22, 103, 160, 254, 292, 349, 373, 609
Alw21I	GWGCWC	1 cut(s)	611
AlwI	GGATC	3 cut(s)	233, 246, 304
ApeKI	GCWGC	4 cut(s)	174, 177, 530, 563
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	673, 705
AsuHPI	GGTGA	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	4 cut(s)	186, 189, 542, 550
BccI	CCATC	3 cut(s)	352, 759, 763
BciT130I	CCWGG	1 cut(s)	762
BclI	TGATCA	1 cut(s)	445
BfaI	CTAG	2 cut(s)	183, 338
BfmI	CTRYAG	2 cut(s)	172, 564
BfuAI	ACCTGC	1 cut(s)	632
BglII	AGATCT	2 cut(s)	419, 499
BisI	GCNGC	4 cut(s)	175, 178, 531, 564
BlsI	GCNGC	4 cut(s)	176, 179, 532, 565
Bme1390I	CCNGG	1 cut(s)	762
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	5 cut(s)	109, 388, 388, 410, 517
BpuEI	CTTGAG	2 cut(s)	71, 395
BsaBI	GATNNNNATC	2 cut(s)	243, 273
BsaJI	CCNNGG	3 cut(s)	151, 426, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 662
Bse3DI	GCAATG	2 cut(s)	673, 674
Bse8I	GATNNNNATC	2 cut(s)	243, 273
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	3 cut(s)	151, 426, 760
BseGI	GGATG	3 cut(s)	367, 770, 774
BseJI	GATNNNNATC	2 cut(s)	243, 273
BseLI	CCNNNNNNNGG	2 cut(s)	432, 662
BseMI	GCAATG	2 cut(s)	673, 674
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	186, 189, 542, 550
BsiHKAI	GWGCWC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	432, 662
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	2 cut(s)	176, 568
BspMI	ACCTGC	1 cut(s)	632
BspPI	GGATC	3 cut(s)	233, 246, 304
BspQI	GCTCTTC	2 cut(s)	138, 339
BsrDI	GCAATG	2 cut(s)	673, 674
BssECI	CCNNGG	3 cut(s)	151, 426, 760
BssMI	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	3 cut(s)	152, 202, 524
Bst6I	CTCTTC	3 cut(s)	20, 138, 339
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	123, 407, 468, 503
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	3 cut(s)	367, 770, 774
BstKTI	GATC	6 cut(s)	45, 241, 312, 422, 448, 502
BstMBI	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	762
BstSCI	CCNGG	1 cut(s)	760
BstSFI	CTRYAG	2 cut(s)	172, 564
BstV1I	GCAGC	4 cut(s)	186, 189, 542, 550
BstX2I	RGATCY	4 cut(s)	238, 309, 419, 499
BstYI	RGATCY	4 cut(s)	238, 309, 419, 499
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	367, 770, 774
BtsIMutI	CAGTG	1 cut(s)	529
BveI	ACCTGC	1 cut(s)	632
Cac8I	GCNNGC	1 cut(s)	158
CviAII	CATG	1 cut(s)	604
DdeI	CTNAG	4 cut(s)	123, 407, 468, 503
DpnI	GATC	6 cut(s)	44, 240, 311, 421, 447, 501
DpnII	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
Eam1104I	CTCTTC	3 cut(s)	20, 138, 339
EarI	CTCTTC	3 cut(s)	20, 138, 339
Ecl136II	GAGCTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	611
Eco53kI	GAGCTC	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	609
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	607
FaiI	YATR	7 cut(s)	99, 191, 213, 222, 228, 440, 605
FatI	CATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	175, 178, 531, 564
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	4 cut(s)	175, 178, 531, 564
FspBI	CTAG	2 cut(s)	183, 338
GluI	GCNGC	4 cut(s)	175, 178, 531, 564
Hin1II	CATG	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	753
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	3 cut(s)	355, 457, 776
Hpy188III	TCNNGA	5 cut(s)	88, 278, 300, 383, 635
HpyAV	CCTTC	2 cut(s)	85, 323
HpyCH4III	ACNGT	3 cut(s)	152, 202, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	4 cut(s)	123, 407, 468, 503
Hsp92II	CATG	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
LguI	GCTCTTC	2 cut(s)	138, 339
LpnPI	CCDG	5 cut(s)	251, 620, 627, 720, 747
Lsp1109I	GCAGC	4 cut(s)	186, 189, 542, 550
LweI	GCATC	5 cut(s)	109, 388, 388, 410, 517
MaeI	CTAG	2 cut(s)	183, 338
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	44, 240, 311, 421, 447, 501
MboI	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
MboII	GAAGA	7 cut(s)	18, 37, 84, 125, 356, 640, 748
MflI	RGATCY	4 cut(s)	238, 309, 419, 499
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	2 cut(s)	167, 630
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	7 cut(s)	21, 189, 466, 470, 511, 636, 666
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	2 cut(s)	294, 747
MslI	CAYNNNNRTG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	403
PciSI	GCTCTTC	2 cut(s)	138, 339
PfeI	GAWTC	1 cut(s)	753
PkrI	GCNGC	4 cut(s)	176, 179, 532, 565
Psp124BI	GAGCTC	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	1 cut(s)	240
PstI	CTGCAG	2 cut(s)	176, 568
PsuI	RGATCY	4 cut(s)	238, 309, 419, 499
RseI	CAYNNNNRTG	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	611
SapI	GCTCTTC	2 cut(s)	138, 339
SaqAI	TTAA	2 cut(s)	294, 747
SatI	GCNGC	4 cut(s)	175, 178, 531, 564
Sau3AI	GATC	6 cut(s)	42, 238, 309, 419, 445, 499
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	1 cut(s)	611
SfaNI	GCATC	5 cut(s)	109, 388, 388, 410, 517
SfcI	CTRYAG	2 cut(s)	172, 564
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	86, 374
SmoI	CTYRAG	2 cut(s)	86, 374
Sse9I	AATT	2 cut(s)	167, 630
SspMI	CTAG	2 cut(s)	183, 338
SstI	GAGCTC	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	152, 202, 524
TaqI	TCGA	1 cut(s)	384
TaqII	GACCGA	1 cut(s)	423
TasI	AATT	2 cut(s)	167, 630
TfiI	GAWTC	1 cut(s)	753
Tru1I	TTAA	2 cut(s)	294, 747
Tru9I	TTAA	2 cut(s)	294, 747
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	4 cut(s)	174, 177, 530, 563
TspRI	CASTG	1 cut(s)	529
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	2 cut(s)	183, 338
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.