Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

63523817 .. 63528968

Gene Structure 5152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG381500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATTATATACAGCATGGAGAAGACACTTGAGAAATATCAAAGATACACTTATGCAGCACTGGAAGCGGGTCAACCTGCTCAGAATACACAGCAGAGCAGATATGAAGAATATGAGAACCTTAAAGTGAAAGTTGAGGTCCTACAACGTACGCAGAGACGCTTTCTTGGGGAAGATTTGGAAAATTTAGACACAAAGGAGCTTGGGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAACATATACTTGAACAGCTTTCAGATCTTCAGAGGAAGGAAAAGATGCTGCTAGAAGCAAACGATGAATTGAGAAGGAAGTTGGAAGAAAGTAATGAAGGCCTTCAACGTTCCTGGAAAGCAAAGCAGCCAAGTATTCCAAATGGCCACCCGTCTACTGCTCAATCAGATCAAGGTTTATTTGAGCGTTTACAATGCAACAACATTACACTGCAGATAGGCCACAGTCGTGAGGTAACAAGTGAGGTAAATGTAGCAACCTCAACCCAAACTCGTAGCGGATTTGTCCCAGAATGGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

188

Amino Acids

21.96

Weight (kDa)

5.76

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	28 - 116	8.9e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	416
AciI	CCGC	2 cut(s)	68, 540
AclI	AACGTT	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	238, 275, 368
AjnI	CCWGG	1 cut(s)	374
AleI	CACNNNNGTG	1 cut(s)	489
AluBI	AGCT	3 cut(s)	202, 211, 280
AluI	AGCT	3 cut(s)	202, 211, 280
Alw26I	GTCTC	1 cut(s)	151
AoxI	GGCC	3 cut(s)	361, 406, 481
ApeKI	GCWGC	4 cut(s)	56, 208, 310, 388
ApoI	RAATTY	1 cut(s)	184
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	68, 220, 297, 400
BciT130I	CCWGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	2 cut(s)	224, 314
BfmI	CTRYAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	4 cut(s)	57, 209, 311, 389
BlsI	GCNGC	4 cut(s)	58, 210, 312, 390
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	297, 549
BpiI	GAAGAC	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	50, 233
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	68, 220, 297, 400
BshFI	GGCC	3 cut(s)	363, 408, 483
BsiWI	CGTACG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	533
BsmAI	GTCTC	1 cut(s)	151
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	363, 408, 483
Bsp143I	GATC	2 cut(s)	286, 430
BspACI	CCGC	2 cut(s)	68, 540
BspANI	GGCC	3 cut(s)	363, 408, 483
BspCNI	CTCAG	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	286, 430
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	564
BstKTI	GATC	2 cut(s)	289, 433
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	2 cut(s)	286, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 208
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	68, 220, 297, 400
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	363, 408, 483
BtsCI	GGATG	1 cut(s)	564
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	59, 470
BveI	ACCTGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	8 cut(s)	202, 211, 261, 280, 363, 391, 408, 483
CviKI_1	RGCY	8 cut(s)	202, 211, 261, 280, 363, 391, 408, 483
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	288, 432
DpnII	GATC	2 cut(s)	286, 430
EaeI	YGGCCR	1 cut(s)	406
Eco147I	AGGCCT	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	1 cut(s)	19
FaiI	YATR	8 cut(s)	8, 10, 17, 54, 105, 114, 267, 269
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	1 cut(s)	15
FauI	CCCGC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	4 cut(s)	57, 209, 311, 389
Fsp4HI	GCNGC	4 cut(s)	57, 209, 311, 389
FspBI	CTAG	2 cut(s)	224, 314
GluI	GCNGC	4 cut(s)	57, 209, 311, 389
HaeIII	GGCC	3 cut(s)	363, 408, 483
HgaI	GACGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	74, 417, 452
Hpy188I	TCNGA	4 cut(s)	84, 286, 294, 430
Hpy188III	TCNNGA	2 cut(s)	252, 491
Hpy8I	GTNNAC	3 cut(s)	74, 417, 452
HpyAV	CCTTC	4 cut(s)	292, 330, 353, 374
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	2 cut(s)	148, 370
HpyCH4V	TGCA	3 cut(s)	56, 459, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 208
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	148, 370
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	286, 430
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	47, 90, 361, 388
Lsp1109I	GCAGC	4 cut(s)	68, 220, 297, 400
LweI	GCATC	2 cut(s)	297, 549
MaeI	CTAG	2 cut(s)	224, 314
MaeII	ACGT	2 cut(s)	148, 370
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	2 cut(s)	288, 432
MboI	GATC	2 cut(s)	286, 430
MboII	GAAGA	5 cut(s)	34, 119, 185, 281, 359
MflI	RGATCY	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	2 cut(s)	184, 329
MluNI	TGGCCA	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	5 cut(s)	130, 288, 487, 499, 532
Mox20I	TGGCCA	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	65, 208
NdeII	GATC	2 cut(s)	286, 430
NlaIII	CATG	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	363
Pfl23II	CGTACG	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	58, 210, 312, 390
PpuMI	RGGWCCY	1 cut(s)	139
Psp1406I	AACGTT	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspLI	CGTACG	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	4 cut(s)	57, 209, 311, 389
Sau3AI	GATC	2 cut(s)	286, 430
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	376
SfaNI	GCATC	2 cut(s)	297, 549
SfcI	CTRYAG	1 cut(s)	473
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	29, 212
SmoI	CTYRAG	2 cut(s)	29, 212
Sse9I	AATT	2 cut(s)	184, 329
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	68, 540
SspMI	CTAG	2 cut(s)	224, 314
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	2 cut(s)	151, 373
TasI	AATT	2 cut(s)	184, 329
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	66, 477
TseI	GCWGC	4 cut(s)	56, 208, 310, 388
TspDTI	ATGAA	4 cut(s)	120, 234, 342, 372
TspRI	CASTG	2 cut(s)	66, 477
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	224, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.