Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Forward (+)

28921555 .. 28925376

Gene Structure 3822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G290500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGAAGAGGGAAGGTAGAGCTGAAGAGGATCGAGAACAAAATAAACCAACAGGTGACATTCGCAAAAAGACGAAATGGGTTGCTAAAGAAGGCGTACGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCACCCGCGGCAAGCTCTATGAGTTCTGCAGCGGCTCTAGCATGGAGAAGACACTTGAGAGGTATCAAAGATGCAGTTATAGTGCACTGGAAGCGAGTCAACCTGCTCAGGATTCACAGAGCAGATACCAAGATTATTTGAACCTAAAAGCAAAAGTAGAGGTCCTACAGCGCACGCAGAGAAATTTTCTTGGGGAAGATTTGGGTCATTTAGGCACCAAGGAGCTCCAGCAGCTTGAGAATCAACTCGACATGTCCTTGAGGCAAATCAGGTCAACAAAGACCCAAGTTATGCATGGGCAGATTTCTGATCTACTGAGGAAGGAACAGATGCTGCTGGAAGCAAACCATGAACTGAGAAGGAAGCTGGAGGAATGTGACGCAACCATTGAAAGATATTCAAGGACAACTAAGGAGCAAAATCAAAATGTTCCAAATAGCAGCCACCACCAGGCTGCTCAATTTGAGGGAGTCCTTGATCATTCACAATGCAACAATACATTGCAGATCGGCTACAATCCTCCTGAAGTAACAGATCATCACGGGCTACAATCCTCAACGCAAAGTCATAGTGGATTATTCGTCCCTGGGACGTGGGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

250

Amino Acids

28.54

Weight (kDa)

8.23

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	359
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	151, 153, 177
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	44, 690
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	595
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	286, 536, 546
AjiI	CACGTC	1 cut(s)	738
AjnI	CCWGG	2 cut(s)	594, 730
AluBI	AGCT	6 cut(s)	22, 103, 160, 370, 379, 511
AluI	AGCT	6 cut(s)	22, 103, 160, 370, 379, 511
Alw21I	GWGCWC	4 cut(s)	105, 232, 372, 747
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	478
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	5 cut(s)	174, 376, 478, 585, 599
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	105, 372
BbsI	GAAGAC	2 cut(s)	133, 200
Bbv12I	GWGCWC	4 cut(s)	105, 232, 372, 747
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	186, 388, 465, 586, 597
BciT130I	CCWGG	2 cut(s)	596, 732
BclI	TGATCA	1 cut(s)	622
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	2 cut(s)	172, 311
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	7 cut(s)	154, 175, 178, 377, 479, 586, 600
BlsI	GCNGC	7 cut(s)	155, 176, 179, 378, 480, 587, 601
Bme1390I	CCNGG	2 cut(s)	596, 732
Bme18I	GGWCC	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	738
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	596, 732
BmsI	GCATC	3 cut(s)	109, 206, 465
BpiI	GAAGAC	2 cut(s)	133, 200
BpmI	CTGGAG	2 cut(s)	356, 533
Bpu10I	CCTNAGC	2 cut(s)	123, 252
BpuEI	CTTGAG	3 cut(s)	221, 401, 424
BsaJI	CCNNGG	4 cut(s)	151, 363, 730, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	2 cut(s)	596, 732
BseDI	CCNNGG	4 cut(s)	151, 363, 730, 731
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	5 cut(s)	114, 120, 266, 452, 491
BseNI	ACTGG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	5 cut(s)	186, 388, 465, 586, 597
Bsh1236I	CGCG	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	4 cut(s)	105, 232, 372, 747
BsiWI	CGTACG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	713
Bsp1286I	GDGCHC	4 cut(s)	105, 232, 372, 747
Bsp143I	GATC	5 cut(s)	30, 454, 622, 651, 679
BspACI	CCGC	3 cut(s)	151, 153, 177
BspCNI	CTCAG	5 cut(s)	115, 119, 265, 453, 492
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	361
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	151, 363, 730, 731
BssMI	GATC	5 cut(s)	30, 454, 622, 651, 679
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	596, 732
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	158, 320
BstDEI	CTNAG	6 cut(s)	106, 123, 252, 461, 500, 555
BstDSI	CCRYGG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	5 cut(s)	33, 457, 625, 654, 682
BstMBI	GATC	5 cut(s)	30, 454, 622, 651, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 376
BstNI	CCWGG	2 cut(s)	596, 732
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	594, 730
BstSFI	CTRYAG	2 cut(s)	172, 311
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	5 cut(s)	186, 388, 465, 586, 597
BstV2I	GAAGAC	2 cut(s)	133, 200
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	158, 320
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	307
Cfr42I	CCGCGG	1 cut(s)	154
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	4 cut(s)	187, 397, 440, 494
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	6 cut(s)	106, 123, 252, 461, 500, 555
DpnI	GATC	5 cut(s)	32, 456, 624, 653, 681
DpnII	GATC	5 cut(s)	30, 454, 622, 651, 679
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	103, 370
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	2 cut(s)	105, 372
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	2 cut(s)	103, 370
Eco57I	CTGAAG	2 cut(s)	44, 690
EcoICRI	GAGCTC	2 cut(s)	103, 370
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	594, 730
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	441
EcoT38I	GRGCYC	2 cut(s)	105, 372
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	190, 400, 443, 497
FaiI	YATR	8 cut(s)	165, 188, 225, 398, 437, 441, 495, 714
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	4 cut(s)	186, 396, 439, 493
FauI	CCCGC	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	7 cut(s)	154, 175, 178, 377, 479, 586, 600
FriOI	GRGCYC	2 cut(s)	105, 372
Fsp4HI	GCNGC	7 cut(s)	154, 175, 178, 377, 479, 586, 600
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	7 cut(s)	154, 175, 178, 377, 479, 586, 600
GsuI	CTGGAG	2 cut(s)	356, 533
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	190, 400, 443, 497
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	2 cut(s)	245, 420
HindII	GTYRAC	2 cut(s)	245, 420
HinfI	GANTC	4 cut(s)	241, 257, 385, 615
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	230, 245, 420
Hpy188I	TCNGA	2 cut(s)	454, 749
Hpy188III	TCNNGA	3 cut(s)	34, 254, 668
Hpy8I	GTNNAC	3 cut(s)	230, 245, 420
HpyAV	CCTTC	4 cut(s)	7, 85, 460, 498
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	6 cut(s)	174, 219, 230, 439, 636, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 376
HpyF3I	CTNAG	6 cut(s)	106, 123, 252, 461, 500, 555
HpySE526I	ACGT	1 cut(s)	737
Hsp92II	CATG	4 cut(s)	190, 400, 443, 497
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	622
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	30, 454, 622, 651, 679
LmnI	GCTCC	3 cut(s)	367, 375, 559
Lsp1109I	GCAGC	5 cut(s)	186, 388, 465, 586, 597
LweI	GCATC	3 cut(s)	109, 206, 465
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	3 cut(s)	55, 521, 673
MalI	GATC	5 cut(s)	32, 456, 624, 653, 681
MboI	GATC	5 cut(s)	30, 454, 622, 651, 679
MboII	GAAGA	5 cut(s)	18, 37, 133, 205, 353
MhlI	GDGCHC	4 cut(s)	105, 232, 372, 747
MluCI	AATT	2 cut(s)	328, 605
MlyI	GAGTC	2 cut(s)	250, 624
Mph1103I	ATGCAT	1 cut(s)	441
MspA1I	CMGCKG	2 cut(s)	153, 177
MspR9I	CCNGG	2 cut(s)	596, 732
MvaI	CCWGG	2 cut(s)	596, 732
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 376
NdeII	GATC	5 cut(s)	30, 454, 622, 651, 679
NlaIII	CATG	4 cut(s)	190, 400, 443, 497
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	55, 521
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	400
PasI	CCCWGGG	1 cut(s)	731
PciI	ACATGT	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	257, 385
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	155, 176, 179, 378, 480, 587, 601
PleI	GAGTC	2 cut(s)	249, 623
PpsI	GAGTC	2 cut(s)	249, 623
PpuMI	RGGWCCY	1 cut(s)	307
PscI	ACATGT	1 cut(s)	396
Psp124BI	GAGCTC	2 cut(s)	105, 372
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	594, 730
PspGI	CCWGG	2 cut(s)	594, 730
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	307
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	2 cut(s)	105, 372
SacII	CCGCGG	1 cut(s)	154
SatI	GCNGC	7 cut(s)	154, 175, 178, 377, 479, 586, 600
Sau3AI	GATC	5 cut(s)	30, 454, 622, 651, 679
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	250, 624
ScrFI	CCNGG	2 cut(s)	596, 732
SduI	GDGCHC	4 cut(s)	105, 232, 372, 747
SfaNI	GCATC	3 cut(s)	109, 206, 465
SfcI	CTRYAG	2 cut(s)	172, 311
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	3 cut(s)	200, 380, 403
SmoI	CTYRAG	3 cut(s)	200, 380, 403
Sse9I	AATT	2 cut(s)	328, 605
SsiI	CCGC	3 cut(s)	151, 153, 177
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	2 cut(s)	105, 372
StyD4I	CCNGG	2 cut(s)	594, 730
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	2 cut(s)	33, 393
TasI	AATT	2 cut(s)	328, 605
TauI	GCSGC	2 cut(s)	156, 180
TfiI	GAWTC	2 cut(s)	257, 385
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	55, 521
TseI	GCWGC	5 cut(s)	174, 376, 478, 585, 599
Tsp45I	GTSAC	2 cut(s)	55, 521
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	237
VneI	GTGCAC	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.