Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004193.1

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Forward (+)

4874 .. 6428

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004193.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgggaagagggaaggtggagctgaagaggatcgagaacaagataaatcgacaagtaacattcgcaaagagaaggaacgggctgctgaagaaggcgtacgagctctcccttctctgtgatgcagagattgctctcatcatcttctctagccgtggcaagctctatgagttctgcagcgggcccagcatggagaagacacttgagaaatatcaaagatacacttatgcagcactggaagcgggtcagcctgctcagaatacacaggttaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

90

Amino Acids

10.29

Weight (kDa)

9.65

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	177, 239
AclWI	GGATC	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	44, 107
AfaI	GTAC	1 cut(s)	98
AluBI	AGCT	3 cut(s)	22, 103, 160
AluI	AGCT	3 cut(s)	22, 103, 160
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	179
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	82, 174, 227
AspS9I	GGNCC	2 cut(s)	179, 180
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	105, 183
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	69, 186, 239
BceAI	ACGGC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	3 cut(s)	83, 175, 228
BlsI	GCNGC	3 cut(s)	84, 176, 229
BmgT120I	GGNCC	2 cut(s)	179, 180
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	69, 186, 239
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	105
BsiWI	CGTACG	1 cut(s)	96
BsnI	GGCC	1 cut(s)	181
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	105, 183
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	177, 239
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	176
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	158, 179, 249
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 183, 236
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	69, 186, 239
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	3 cut(s)	158, 179, 249
Cfr13I	GGNCC	2 cut(s)	179, 180
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	7 cut(s)	22, 82, 103, 150, 160, 181, 247
CviKI_1	RGCY	7 cut(s)	22, 82, 103, 150, 160, 181, 247
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	105, 183
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	44, 107
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	105, 183
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	165, 188, 225
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	170, 232
Fnu4HI	GCNGC	3 cut(s)	83, 175, 228
FriOI	GRGCYC	2 cut(s)	105, 183
Fsp4HI	GCNGC	3 cut(s)	83, 175, 228
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	3 cut(s)	83, 175, 228
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	34
HpyAV	CCTTC	4 cut(s)	7, 66, 85, 119
HpyCH4V	TGCA	3 cut(s)	122, 174, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 183, 236
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	196, 218, 248, 261
Lsp1109I	GCAGC	3 cut(s)	69, 186, 239
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	5 cut(s)	18, 37, 100, 133, 205
MhlI	GDGCHC	2 cut(s)	105, 183
MluCI	AATT	1 cut(s)	268
MnlI	CCTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	128, 183, 236
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	181
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	84, 176, 229
Psp124BI	GAGCTC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	182
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	181
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	179, 180
PstI	CTGCAG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	3 cut(s)	83, 175, 228
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	179, 180
SduI	GDGCHC	2 cut(s)	105, 183
SetI	ASST	5 cut(s)	18, 24, 105, 162, 267
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	177, 239
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	105
TaqI	TCGA	2 cut(s)	33, 49
TasI	AATT	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	3 cut(s)	82, 174, 227
TspRI	CASTG	1 cut(s)	237
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.