Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

4133091 .. 4140819

Gene Structure 7729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1059300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGAAGAGGGAAGGTGGAGTTGAAGAGGATCGAGAATAAGATAAATCGACAGGTAACATTTGCAAAAAGAAGGAATGGGCTGCTAAAGAAGGCGTACGAACTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCACCAGCGGAAAGCTCTATGAGTTCTGCAGCGGCCCTAGCATAGCGAAGACGCTTGAGAGGCATCAAAGATGCACTTATGGAGAACTGGGAGCAAGTCAATCTGCTGAGGACGAACAGAGCAGATACCAAGAATACTTGAAGCTAAAAACGAAAGTAGAGGCCCTACAACGCACGCAGAGACATCTTCTTGGGGAAGATTTGGTTCATTTAGGCACGAAGGAGCTTCAGCAGCTTGAGAATCAACTAGATGTGTCGATGAAGAAAATCAGGTCAACGAAGACCCAATTTATGCATGTTCAGATTTCTGAGCTTCAAAGGAAAGAAGAAATGCTACTGGAAGCAAACACTGGACTGAGAAGGAAGTTGGAAGAAATTACTGCTGGCCATCAACGATCATGGAATGGCAATCACCAGGCTGCTCAATTAGAAGGATTCCCTGAGCATTTGCAATACAACAATGCATTGCAGATCGGTACTCCAGTAGTAACAAATGATGAGGCGAATGTAGCAACGTCCTCAGCACAAAATGGTACGGGATTCTTCCCCGGTTGGATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

236

Amino Acids

26.69

Weight (kDa)

8.9

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.1e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 172	5.4e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	153, 177
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	3 cut(s)	98, 622, 679
AgsI	TTSAA	3 cut(s)	25, 286, 461
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	5 cut(s)	160, 289, 370, 379, 457
AluI	AGCT	5 cut(s)	160, 289, 370, 379, 457
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	3 cut(s)	178, 306, 529
ApeKI	GCWGC	4 cut(s)	82, 174, 376, 563
AspS9I	GGNCC	2 cut(s)	179, 307
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	1 cut(s)	548
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BalI	TGGCCA	1 cut(s)	531
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BbsI	GAAGAC	3 cut(s)	133, 200, 431
BbvCI	CCTCAGC	3 cut(s)	123, 252, 664
BbvI	GCAGC	4 cut(s)	69, 186, 388, 550
BccI	CCATC	1 cut(s)	540
BciT130I	CCWGG	1 cut(s)	560
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	2 cut(s)	183, 392
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	5 cut(s)	83, 175, 178, 377, 564
BlsI	GCNGC	5 cut(s)	84, 176, 179, 378, 565
Bme1390I	CCNGG	2 cut(s)	560, 693
BmgT120I	GGNCC	2 cut(s)	179, 307
BmrFI	CCNGG	2 cut(s)	560, 693
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	4 cut(s)	109, 206, 217, 690
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	3 cut(s)	133, 200, 431
BpmI	CTGGAG	1 cut(s)	609
Bpu10I	CCTNAGC	4 cut(s)	123, 252, 585, 664
BpuEI	CTTGAG	2 cut(s)	221, 401
BpuMI	CCSGG	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	691
Bse1I	ACTGG	4 cut(s)	237, 486, 499, 626
Bse3DI	GCAATG	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	1 cut(s)	705
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	7 cut(s)	114, 120, 243, 444, 491, 576, 678
BseNI	ACTGG	4 cut(s)	237, 486, 499, 626
BseXI	GCAGC	4 cut(s)	69, 186, 388, 550
BshFI	GGCC	3 cut(s)	180, 308, 531
BsiSI	CCGG	1 cut(s)	693
BsiWI	CGTACG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	180, 308, 531
Bsp143I	GATC	3 cut(s)	30, 539, 615
BspACI	CCGC	2 cut(s)	153, 177
BspANI	GGCC	3 cut(s)	180, 308, 531
BspCNI	CTCAG	7 cut(s)	115, 119, 244, 445, 492, 577, 677
BspMAI	CTGCAG	1 cut(s)	176
BspPI	GGATC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	4 cut(s)	237, 486, 499, 626
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	3 cut(s)	30, 539, 615
Bst2UI	CCWGG	1 cut(s)	560
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	320, 529
BstDEI	CTNAG	7 cut(s)	106, 123, 252, 453, 500, 585, 664
BstF5I	GGATG	1 cut(s)	705
BstKTI	GATC	3 cut(s)	33, 542, 618
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	30, 539, 615
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 183, 205, 376, 653
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	558, 691
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	69, 186, 388, 550
BstV2I	GAAGAC	3 cut(s)	133, 200, 431
BsuRI	GGCC	3 cut(s)	180, 308, 531
BtsCI	GGATG	1 cut(s)	705
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	320, 529
Cfr13I	GGNCC	2 cut(s)	179, 307
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	97, 621, 678
CviAII	CATG	2 cut(s)	440, 543
CviQI	GTAC	3 cut(s)	97, 621, 678
DdeI	CTNAG	7 cut(s)	106, 123, 252, 453, 500, 585, 664
DpnI	GATC	3 cut(s)	32, 541, 617
DpnII	GATC	3 cut(s)	30, 539, 615
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	558
EcoT22I	ATGCAT	2 cut(s)	441, 610
FaeI	CATG	2 cut(s)	443, 546
FaiI	YATR	6 cut(s)	165, 188, 225, 437, 441, 544
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	2 cut(s)	439, 542
Fnu4HI	GCNGC	5 cut(s)	83, 175, 178, 377, 564
Fsp4HI	GCNGC	5 cut(s)	83, 175, 178, 377, 564
FspBI	CTAG	2 cut(s)	183, 392
GluI	GCNGC	5 cut(s)	83, 175, 178, 377, 564
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	180, 308, 531
HapII	CCGG	1 cut(s)	693
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	443, 546
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	385, 579, 684
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	3 cut(s)	447, 454, 707
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	6 cut(s)	7, 66, 85, 358, 498, 569
HpyCH4IV	ACGT	1 cut(s)	659
HpyCH4V	TGCA	7 cut(s)	65, 174, 219, 439, 595, 608, 613
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 183, 205, 376, 653
HpyF3I	CTNAG	7 cut(s)	106, 123, 252, 453, 500, 585, 664
HpySE526I	ACGT	1 cut(s)	659
Hsp92II	CATG	2 cut(s)	443, 546
Kzo9I	GATC	3 cut(s)	30, 539, 615
LmnI	GCTCC	2 cut(s)	236, 367
Lsp1109I	GCAGC	4 cut(s)	69, 186, 388, 550
LweI	GCATC	4 cut(s)	109, 206, 217, 690
MaeI	CTAG	2 cut(s)	183, 392
MaeII	ACGT	1 cut(s)	659
MaeIII	GTNAC	2 cut(s)	55, 631
MalI	GATC	3 cut(s)	32, 541, 617
MboI	GATC	3 cut(s)	30, 539, 615
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	3 cut(s)	431, 519, 569
MluNI	TGGCCA	1 cut(s)	531
MmeI	TCCRAC	2 cut(s)	492, 677
MnlI	CCTC	7 cut(s)	21, 118, 198, 247, 298, 637, 673
Mox20I	TGGCCA	1 cut(s)	531
Mph1103I	ATGCAT	2 cut(s)	441, 610
MscI	TGGCCA	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	153, 177
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	2 cut(s)	560, 693
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	5 cut(s)	128, 183, 205, 376, 653
NciI	CCSGG	1 cut(s)	693
NdeII	GATC	3 cut(s)	30, 539, 615
NlaIII	CATG	2 cut(s)	443, 546
NsiI	ATGCAT	2 cut(s)	441, 610
NspI	RCATGY	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	385, 579, 684
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	84, 176, 179, 378, 565
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspLI	CGTACG	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	179, 307
PstI	CTGCAG	1 cut(s)	176
RsaI	GTAC	3 cut(s)	98, 622, 679
RsaNI	GTAC	3 cut(s)	97, 621, 678
SatI	GCNGC	5 cut(s)	83, 175, 178, 377, 564
Sau3AI	GATC	3 cut(s)	30, 539, 615
Sau96I	GGNCC	2 cut(s)	179, 307
ScrFI	CCNGG	2 cut(s)	560, 693
SfaNI	GCATC	4 cut(s)	109, 206, 217, 690
SfcI	CTRYAG	1 cut(s)	172
SmlI	CTYRAG	2 cut(s)	200, 380
SmoI	CTYRAG	2 cut(s)	200, 380
Sse9I	AATT	3 cut(s)	431, 519, 569
SsiI	CCGC	2 cut(s)	153, 177
SspMI	CTAG	2 cut(s)	183, 392
StyD4I	CCNGG	2 cut(s)	558, 691
TaiI	ACGT	1 cut(s)	662
TaqI	TCGA	3 cut(s)	33, 49, 401
TasI	AATT	3 cut(s)	431, 519, 569
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	385, 579, 684
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	4 cut(s)	82, 174, 376, 563
TspDTI	ATGAA	2 cut(s)	341, 419
TspRI	CASTG	1 cut(s)	499
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	2 cut(s)	183, 392
Zsp2I	ATGCAT	2 cut(s)	441, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.