Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

52610602 .. 52625325

Gene Structure 14724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG367400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAAGACACTTGAGAAATATCAAAGATACACTTATGCAGCACTGGAAGCGGGTCAACCTGCTCAGAATACACAGAGCAGATATGAAGAATATGAGAACCTTAAAGTGAAAGTTGAGGTCCTACAACGTACGCAGAGACGCTTTCTTGGGGAAGATTTGGAAAATTTAGACACAAAGGAGCTTGGGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAACATATACTTGAACAGCTTTCAGATCTTCAGAGGAAGGAAAAGATGCTGCTAGAAGCAAACGATGAATTGAGAAGGAAGTTGGAAGAAAGTAATGAAGGCCTTCAACGTTCCTGGAAAGCAAAGCAGCCAAGTATTCCAAATGGCCACCCGTCTACTGCTCAATCAGATCAAGGTTTATTTGAGCGTTTACAATGCAACAACATTACACTGCAGATAGGCATGGAGAATATACTTGAACGCTATGAGCGGTACTCGTACGCAGAGAGACAGCTAGTCGAACCTGATTTGGAATCACAGGGTAACTGGACCTTCGAACATGCTAGACTGAAGGTGAAAGTTGAGCTTCTGCAAAGAAACCTTAGGCACTATTTGGGAGAAGATTTGGATTCATTGAGTATCAAAGAGATCCAAAGTTTGGAGCAACAGCTTGACAATTCTCTTAAGCAAATTCGATCAAGAAAGAACCAACTCATGCATGAGTCTATCTCCGAGCTTCAGAGAAAGGAGAAGGCAATGCAGGAGCAAAATAACTTCCTTTCAAAGAAGATTAAGGAGAAAGAGAAGAATGTAGCGGAAGCTCAGGAGTGGCACTCAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

282

Amino Acids

33.47

Weight (kDa)

6.17

Isoelectric Point (pI)

60.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	23 - 110	2.5e-24	K-box region
K-box	PF01486	180 - 265	1.6e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	3 cut(s)	53, 493, 818
AclI	AACGTT	1 cut(s)	352
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	166, 693
AcuI	CTGAAG	3 cut(s)	257, 593, 725
AfaI	GTAC	3 cut(s)	133, 497, 503
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	5 cut(s)	220, 257, 350, 482, 786
AhdI	GACNNNNNGTC	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	8 cut(s)	184, 193, 262, 517, 589, 673, 739, 824
AluI	AGCT	8 cut(s)	184, 193, 262, 517, 589, 673, 739, 824
Alw26I	GTCTC	2 cut(s)	133, 505
AlwI	GGATC	1 cut(s)	646
AoxI	GGCC	2 cut(s)	343, 388
ApeKI	GCWGC	4 cut(s)	41, 190, 292, 370
ApoI	RAATTY	2 cut(s)	166, 693
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	121, 552
AsuHPI	GGTGA	1 cut(s)	589
AsuII	TTCGAA	1 cut(s)	558
AvaII	GGWCC	2 cut(s)	121, 552
AxyI	CCTNAGG	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	53, 202, 279, 382
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	133, 505
BfaI	CTAG	4 cut(s)	206, 296, 518, 567
BfmI	CTRYAG	1 cut(s)	455
BfrI	CTTAAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	4 cut(s)	42, 191, 293, 371
BlsI	GCNGC	4 cut(s)	43, 192, 294, 372
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	2 cut(s)	121, 552
BmeRI	GACNNNNNGTC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	121, 552
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	5 cut(s)	482, 514, 716, 748, 821
Bpu10I	CCTNAGC	1 cut(s)	825
Bpu14I	TTCGAA	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	35, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	51, 554
Bse21I	CCTNAGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	80, 839
BseNI	ACTGG	2 cut(s)	51, 554
BseXI	GCAGC	4 cut(s)	53, 202, 279, 382
BshFI	GGCC	2 cut(s)	345, 390
BsiWI	CGTACG	2 cut(s)	131, 501
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	2 cut(s)	133, 505
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	345, 390
Bsp119I	TTCGAA	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	268, 412, 651, 698
BspACI	CCGC	3 cut(s)	53, 493, 818
BspANI	GGCC	2 cut(s)	345, 390
BspCNI	CTCAG	2 cut(s)	79, 838
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	646
BspT104I	TTCGAA	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	686
BsrBI	CCGCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	2 cut(s)	51, 554
BssMI	GATC	4 cut(s)	268, 412, 651, 698
Bst2UI	CCWGG	1 cut(s)	358
BstAFI	CTTAAG	1 cut(s)	686
BstBI	TTCGAA	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	66, 605, 825, 838
BstKTI	GATC	4 cut(s)	271, 415, 654, 701
BstMAI	GTCTC	2 cut(s)	133, 505
BstMBI	GATC	4 cut(s)	268, 412, 651, 698
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 190
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	53, 202, 279, 382
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	268, 651
BstYI	RGATCY	2 cut(s)	268, 651
Bsu36I	CCTNAGG	1 cut(s)	605
BsuRI	GGCC	2 cut(s)	345, 390
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	44, 452
BveI	ACCTGC	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	121, 552
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	132, 496, 502
CviAII	CATG	4 cut(s)	466, 563, 718, 722
CviQI	GTAC	3 cut(s)	132, 496, 502
DdeI	CTNAG	4 cut(s)	66, 605, 825, 838
DpnI	GATC	4 cut(s)	270, 414, 653, 700
DpnII	GATC	4 cut(s)	268, 412, 651, 698
DriI	GACNNNNNGTC	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	388
Eam1105I	GACNNNNNGTC	1 cut(s)	518
Eco147I	AGGCCT	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	121, 552
Eco57I	CTGAAG	3 cut(s)	257, 593, 725
Eco81I	CCTNAGG	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	356
EcoT22I	ATGCAT	1 cut(s)	723
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	4 cut(s)	469, 566, 721, 725
FalI	AAGNNNNNCTT	4 cut(s)	19, 51, 573, 605
FatI	CATG	4 cut(s)	465, 562, 717, 721
FauI	CCCGC	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	4 cut(s)	42, 191, 293, 371
Fsp4HI	GCNGC	4 cut(s)	42, 191, 293, 371
FspBI	CTAG	4 cut(s)	206, 296, 518, 567
GluI	GCNGC	4 cut(s)	42, 191, 293, 371
HaeIII	GGCC	2 cut(s)	345, 390
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	469, 566, 721, 725
HincII	GTYRAC	1 cut(s)	59
HindII	GTYRAC	1 cut(s)	59
HinfI	GANTC	3 cut(s)	536, 632, 725
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	3 cut(s)	59, 399, 434
Hpy188I	TCNGA	6 cut(s)	69, 268, 276, 412, 736, 744
Hpy188III	TCNNGA	3 cut(s)	234, 702, 827
Hpy8I	GTNNAC	3 cut(s)	59, 399, 434
HpyAV	CCTTC	7 cut(s)	274, 312, 335, 356, 565, 568, 748
HpyCH4IV	ACGT	2 cut(s)	130, 352
HpyCH4V	TGCA	6 cut(s)	41, 441, 457, 595, 721, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 190
HpyF3I	CTNAG	4 cut(s)	66, 605, 825, 838
HpySE526I	ACGT	2 cut(s)	130, 352
Hsp92II	CATG	4 cut(s)	469, 566, 721, 725
Kzo9I	GATC	4 cut(s)	268, 412, 651, 698
LmnI	GCTCC	3 cut(s)	181, 664, 766
LpnPI	CCDG	9 cut(s)	32, 75, 343, 370, 527, 535, 540, 749, 812
Lsp1109I	GCAGC	4 cut(s)	53, 202, 279, 382
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	4 cut(s)	206, 296, 518, 567
MaeII	ACGT	2 cut(s)	130, 352
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	4 cut(s)	270, 414, 653, 700
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	4 cut(s)	268, 412, 651, 698
MboII	GAAGA	8 cut(s)	19, 101, 167, 263, 341, 635, 802, 820
MflI	RGATCY	2 cut(s)	268, 651
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	4 cut(s)	166, 311, 679, 693
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	2 cut(s)	112, 270
Mox20I	TGGCCA	1 cut(s)	390
Mph1103I	ATGCAT	1 cut(s)	723
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	3 cut(s)	105, 687, 795
Msp20I	TGGCCA	1 cut(s)	390
MspCI	CTTAAG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	50, 190
NdeII	GATC	4 cut(s)	268, 412, 651, 698
NlaIII	CATG	4 cut(s)	469, 566, 721, 725
NsiI	ATGCAT	1 cut(s)	723
NspI	RCATGY	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	536, 632
Pfl23II	CGTACG	2 cut(s)	131, 501
PflMI	CCANNNNNTGG	1 cut(s)	661
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	43, 192, 294, 372
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PpuMI	RGGWCCY	1 cut(s)	121
Psp1406I	AACGTT	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspLI	CGTACG	2 cut(s)	131, 501
PspPI	GGNCC	2 cut(s)	121, 552
PspPPI	RGGWCCY	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	2 cut(s)	268, 651
RsaI	GTAC	3 cut(s)	133, 497, 503
RsaNI	GTAC	3 cut(s)	132, 496, 502
SaqAI	TTAA	3 cut(s)	105, 687, 795
SatI	GCNGC	4 cut(s)	42, 191, 293, 371
Sau3AI	GATC	4 cut(s)	268, 412, 651, 698
Sau96I	GGNCC	2 cut(s)	121, 552
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	1 cut(s)	358
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	455
SfuI	TTCGAA	1 cut(s)	558
SinI	GGWCC	2 cut(s)	121, 552
SmlI	CTYRAG	3 cut(s)	14, 194, 686
SmoI	CTYRAG	3 cut(s)	14, 194, 686
Sse9I	AATT	4 cut(s)	166, 311, 679, 693
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	3 cut(s)	53, 493, 818
SspMI	CTAG	4 cut(s)	206, 296, 518, 567
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	356
TaiI	ACGT	2 cut(s)	133, 355
TaqI	TCGA	3 cut(s)	522, 558, 697
TasI	AATT	4 cut(s)	166, 311, 679, 693
TfiI	GAWTC	2 cut(s)	536, 632
Tru1I	TTAA	3 cut(s)	105, 687, 795
Tru9I	TTAA	3 cut(s)	105, 687, 795
TscAI	CASTG	2 cut(s)	51, 459
TseI	GCWGC	4 cut(s)	41, 190, 292, 370
TspDTI	ATGAA	5 cut(s)	102, 216, 324, 354, 624
TspRI	CASTG	2 cut(s)	51, 459
Van91I	CCANNNNNTGG	1 cut(s)	661
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	121, 552
XapI	RAATTY	2 cut(s)	166, 693
XceI	RCATGY	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	4 cut(s)	206, 296, 518, 567
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.