Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Forward (+)

48046801 .. 48052241

Gene Structure 5441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0304600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3480 bp

ATGTCTGAGGAGAATTCTTTGGGTGGAGATGCAATCACCAAGCAAGACACTGCATCAAATAGCCACTCAGCAGTGACGGTGGGTTCCAAAGAAAACCGACAAGATATAAGCAAGAGCAAGGAGGATGGAACTAAAACAGTACCACTTTACAAACTTTTCTCATTTGCTGATTCCACGGATTACCTATTAATGTTTGTTGGTACAATCAGCGCTATTGGTAATGGACTCTGTATGCCTCTACTGATCCTAGTCATGGGAGATATGATTACTTCTTTTGGAGAAACTGGGAATAACAAGAGAGTGGCTGATGCAGTCTCTAAGGTGGCTCTGAAGTTCATTTACTTGGCTTTTGGGGCTGCTGCTGCAGCATTTCTGCAGATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCAAGAATTAGAAGTTTATACTTGAAAACAATATTAAGGCAAGATGTTAGCTTTTTTGATAAAGAAATCAACAGTGGGGAAATTATTGGGAGGATGTCAGGTGATACTGTGCTCATCCAAGAGGCAATGGGTGAGAAGATAGGAAGTTTTATCCAGTTAGTTGCAACATTCATAGGTGGCTTTGTTATAGCATTTTCTGAGGGATGGCTTCTCACCCTTGTCATGCTATCCTCTATTCCACCTCTTGTCTTCTCTGGTGCTGTCATGAACCATTTCGTAGTGAAATTGGCGTCCCGTGGACAAGCTGCATATTCAGGAGGAGCAACTGTGGTAGAACAGACAATTGGTTCAATCAGAACTGTTGCATCATTCACGGGGGAGAAACAAGCTATATATAACTACAACAACTCCTTAAATAAGGCATACACATCCGGTGTACAAGAGGGTTGGGCATCTGGTCTGGGTTTTGGTGTGCTTATGCTTGTGGTATTTTGTACTTACGCCTTGGCTGTATGGTTTGGTGGAATAATGATACTTGAAAGAGGATATAAAGGAGGAGATGTCATGACAGTAATTTTTTCTGTGTTAATTGGCTCTGTGTCTCTTGGGAAAGCATCTCCATGCATGAGTGCATTTGCTCCTGGACAAGCGGCAGCTTTTAAGATGTTTGACGCGATTAACAGAAAGCCGAAGATAGATGCGTATGATACTCATGGGCGAGTTTTAAAAGATATTAGTGGAGACATAGAACTGAGGGATGTTTATTTTAGTTATCCCACAAGACCAGAGGAGCAACTATTCCAAGGATTTTCACTCTTAATACAAAGCGGTGCAACTGCTGCTTTGGTTGGACAGAGCGGAAGTGGTAAATCAACCGTTATCAGTATGATTGAGAGGTTTTATGACCCCCAGGCTGGTGAAGTTCTTATTGATGGTGTTAATCTGAAAGAGTTCCAACTGAAATGGATCAGACAGAAAATAGGCCTCGTCAGCCAGGAACCAGTTTTATTTACAGGTAGCATTAAAGATAATATTGCCTATGGAAAGGATGGTGCAACAACTGAAGAAATAAGGGCTGCTGCTGAGCTTGCCAATGCTGCAAAATTCATAGATATATTGCCACTGGGAATAGATACAATGGTTGGTGAGCATGGAACACAGCTATCTGGAGGACAAAAGCAACGAATTGCTATAGCTAGAGCAATTCTGAAGAACCCAAAAATTCTACTTTTAGATGAAGCCACAAGCGCTCTTGACGCAAATTCTGAGAGAATTGTGCAGGAGGCACTAGACAAAGTAATGATCAACCGAACTACTGTCATTGTAGCCCACCGCTTGAGCACAGTAAGGAATGCTGACACCATTGCTGTAATACATCAAGGAGCAGTTGTTGAAGAAGGACCACATTCTGAGCTAATTAAGGATCCTGATGGAGCATATAGCCAGCTTATAAGGTTGCAAGAAATTATTAGCGTGTCAGAACATACTGGTCTAAATATTGAGGAATCATTTCCAAGAAGAAGTAGTGGTCGTCACTCATTCTCAATCTCATATGGTATTCCTACTGCAAGCGGTGTGCTTGAAACAACACCATTAGAACTTGATATTCGTGCTTTAACACCATCGAAAGGGACTCCAGAAGTCTCTCTTCGCCGCCTGGCTTACCTGAACAAGCCAGAGATACCAGTGCTACTTCTAGGTACTATAGTTGCAGCAGTCAATGGGGTAATCTTCCCTGTTTATGGTAGTTTGTTGTCAACTGTAATCAAGACCTTCTTTGAGCCGCCTCATGAACTCCGTAAGAATTCAAAGTTTTGGGCAACAATCTTTGTTATTCTTGGAGTGGTATCTTTCTTGGCACAATCATCAAGAGCATACCTTTTTGCTGTGGCGGGTTGCAGGTTGATAAGACGAGTTCGAGCAATGTGCTTTGAGAAGGTGGTTTACATGGAAGTAAGTTGGTTTGATGAAGCTGAGAACTCAAGTGGTGTAATTGGGGCAAGGCTTTCTACAGATGCAGCTTCTTTGAGAGGACTTGTTGGAGATGCTCTTGGTTTGGTGGTTCAGAATACAGCAACAGCAATTGCTGGGATGATTATTGCTTTTGGTGCAAATTGGCAACTTTCTCTTGTAATGCTTGTTCTGTTACCTTTATTAGGAGTAAATGGATATTTTCAAGTCCAGTACATGAAAGGATTCAGTGCAGATGCAAAGAAAATGTACGAGGACGCAAGCCAAGTAGCTAGTGATGCTGTGGGGAGTATTCGGACAATTGCTTCCTTTTGTGCTGAACAGAAGGTGATGGAGTTGTACAAGAAAAAATGTGAAGGCCCTATTAAGACGGGGATAAGACAAGGGTTGGTTTCTGGGATAGGTTTTGGGCTATCTCTTTTCTTACAGTTTTCAGTGTTCGCTGTAATTTTTTATATTGGAGGTCTACTTGTTGCAGCAGGCAAGACAACATTCTCTGCAGTTTTCCAGGTTTTCTTTGCTGCCACTATGGCTTCTGTTGGACTCGCCCAGTCAAGCTCCCTAGCACCTGATGTAAGTAAAGGAAAGGGTTCTGCTGCTTCAATATTCGCAATTCTTGACCGGAAATCAAGAATAGACTCTAGTGATAACTCCGGCATGACAATAGAAAATGTGAAGGGAGAAATTGAATTTCACCGTGTCAGTTTCAAGTATCCTAGTAGACCTGACGTGCAAATTTTCAACGATCTTTGCTTGACCATTAGTCATGGGAAGACAATTGCTCTGGTTGGTGAAAGTGGAAGTGGGAAATCGACAGTGGTCTCTTTGCTCCAGAGATTTTACGACCCCAACTCTGGTCACATTACATTGGATGGAATCGAAATCCAGAAACTACAGTTGAAGTGGTTGAGACAGCAAATGGGGCTGGTGAGCCAGGAGCCTCTGTTGTTTAACGACACTATCCGAGCCAACATTGCATATGGAAAGGATGGAGAGGCAACCGAGGCTGAAATTATAGCTGCTGCAGAACTCGCAAATGCACACCAGTTCATTAGTAGTTTACAACATGGTTACGATACAATAACTGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

1159

Amino Acids

124.98

Weight (kDa)

6.49

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	64 - 338	2.8e-58	ABC transporter transmembrane region
ABC_tran	PF00005	406 - 554	6e-33	ABC transporter
ABC_membrane	PF00664	702 - 974	3.5e-54	ABC transporter transmembrane region
ABC_tran	PF00005	1043 - 1139	5.9e-18	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1865
Acc36I	ACCTGC	1 cut(s)	2304
AccBSI	CCGCTC	1 cut(s)	1272
AccI	GTMKAC	2 cut(s)	2851, 3106
AccII	CGCG	1 cut(s)	1088
AciI	CCGC	8 cut(s)	1064, 1242, 1272, 1747, 1986, 2068, 2198, 2306
AclWI	GGATC	4 cut(s)	238, 1388, 1832, 1845
AcsI	RAATTY	7 cut(s)	13, 1517, 1635, 1675, 2218, 3074, 3120
AcuI	CTGAAG	3 cut(s)	350, 1497, 1643
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	8 cut(s)	141, 202, 852, 910, 2116, 2600, 2636, 2726
AfeI	AGCGCT	2 cut(s)	211, 1663
AfiI	CCNNNNNNNGG	6 cut(s)	253, 1328, 2042, 2156, 2570, 3239
AhdI	GACNNNNNGTC	1 cut(s)	3147
AjiI	CACGTC	1 cut(s)	3115
AjnI	CCWGG	6 cut(s)	1054, 1323, 1407, 2070, 2892, 3318
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
Alw21I	GWGCWC	2 cut(s)	528, 1757
Alw26I	GTCTC	7 cut(s)	319, 400, 1020, 1149, 2062, 3211, 3289
AlwI	GGATC	4 cut(s)	238, 1388, 1832, 1845
Aor51HI	AGCGCT	2 cut(s)	211, 1663
AoxI	GGCC	2 cut(s)	1396, 2743
ApoI	RAATTY	7 cut(s)	13, 1517, 1635, 1675, 2218, 3074, 3120
AseI	ATTAAT	1 cut(s)	188
Asp700I	GAANNNNTTC	5 cut(s)	686, 1364, 1923, 2609, 2974
AspLEI	GCGC	2 cut(s)	212, 1664
AspS9I	GGNCC	2 cut(s)	1814, 2744
AvaII	GGWCC	1 cut(s)	1814
BaeI	ACNNNNGTAYC	4 cut(s)	1539, 1572, 2106, 2139
BamHI	GGATCC	1 cut(s)	1837
BarI	GAAGNNNNNNTAC	4 cut(s)	323, 355, 2342, 2374
BbsI	GAAGAC	2 cut(s)	655, 3164
Bbv12I	GWGCWC	2 cut(s)	528, 1757
BccI	CCATC	9 cut(s)	119, 612, 1340, 1457, 1838, 2044, 2710, 3251, 3368
BcgI	CGANNNNNNTGC	2 cut(s)	2322, 2356
BciT130I	CCWGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
BciVI	GTATCC	1 cut(s)	3108
BclI	TGATCA	2 cut(s)	393, 1716
BcoDI	GTCTC	7 cut(s)	319, 400, 1020, 1149, 2062, 3211, 3289
BfaI	CTAG	8 cut(s)	248, 1611, 1703, 2111, 2658, 2948, 3027, 3102
BfmI	CTRYAG	8 cut(s)	363, 374, 1605, 2118, 2424, 2883, 3278, 3408
BfoI	RGCGCY	2 cut(s)	213, 1665
BfuAI	ACCTGC	1 cut(s)	2304
BfuI	GTATCC	1 cut(s)	3108
BglI	GCCNNNNNGGC	1 cut(s)	2915
BlpI	GCTNAGC	1 cut(s)	1497
Bme1390I	CCNGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
Bme18I	GGWCC	1 cut(s)	1814
BmeRI	GACNNNNNGTC	1 cut(s)	3147
BmgBI	CACGTC	1 cut(s)	3115
BmgT120I	GGNCC	2 cut(s)	1814, 2744
BmiI	GGNNCC	4 cut(s)	85, 1413, 1839, 3324
BmrFI	CCNGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
BmrI	ACTGGG	3 cut(s)	294, 1547, 2929
BmuI	ACTGGG	3 cut(s)	294, 1547, 2929
BoxI	GACNNNNGTC	1 cut(s)	3203
BpiI	GAAGAC	2 cut(s)	655, 3164
BpmI	CTGGAG	4 cut(s)	420, 1602, 2034, 3200
Bpu1102I	GCTNAGC	1 cut(s)	1497
BpuEI	CTTGAG	2 cut(s)	1771, 2380
BsaHI	GRCGYC	1 cut(s)	704
BsaI	GGTCTC	1 cut(s)	3211
BsaJI	CCNNGG	6 cut(s)	174, 709, 918, 1216, 1323, 3387
BsaWI	WCCGGW	2 cut(s)	845, 3006
Bsc4I	CCNNNNNNNGG	6 cut(s)	253, 1328, 2042, 2156, 2570, 3239
Bse3DI	GCAATG	4 cut(s)	546, 1776, 2343, 3357
BseBI	CCWGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
BseDI	CCNNGG	6 cut(s)	174, 709, 918, 1216, 1323, 3387
BseLI	CCNNNNNNNGG	6 cut(s)	253, 1328, 2042, 2156, 2570, 3239
BseMI	GCAATG	4 cut(s)	546, 1776, 2343, 3357
BseMII	CTCAG	7 cut(s)	81, 603, 1157, 1488, 1671, 1815, 2379
BseRI	GAGGAG	4 cut(s)	23, 747, 984, 1217
BseYI	CCCAGC	1 cut(s)	2501
BsgI	GTGCAG	2 cut(s)	1712, 2637
Bsh1236I	CGCG	1 cut(s)	1088
BshFI	GGCC	2 cut(s)	1398, 2745
BsiHKAI	GWGCWC	2 cut(s)	528, 1757
BsiSI	CCGG	3 cut(s)	846, 3007, 3039
BslFI	GGGAC	2 cut(s)	691, 2059
BslI	CCNNNNNNNGG	6 cut(s)	253, 1328, 2042, 2156, 2570, 3239
BsmAI	GTCTC	7 cut(s)	319, 400, 1020, 1149, 2062, 3211, 3289
BsmFI	GGGAC	2 cut(s)	691, 2059
BsmI	GAATGC	1 cut(s)	1771
BsnI	GGCC	2 cut(s)	1398, 2745
Bso31I	GGTCTC	1 cut(s)	3211
Bsp1286I	GDGCHC	2 cut(s)	528, 1757
Bsp1407I	TGTACA	2 cut(s)	850, 2724
Bsp143I	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
Bsp1720I	GCTNAGC	1 cut(s)	1497
BspACI	CCGC	8 cut(s)	1064, 1242, 1272, 1747, 1986, 2068, 2198, 2306
BspANI	GGCC	2 cut(s)	1398, 2745
BspCNI	CTCAG	7 cut(s)	80, 604, 1158, 1489, 1672, 1816, 2380
BspFNI	CGCG	1 cut(s)	1088
BspHI	TCATGA	3 cut(s)	678, 978, 2203
BspLI	GGNNCC	4 cut(s)	85, 1413, 1839, 3324
BspMAI	CTGCAG	4 cut(s)	367, 378, 2887, 3412
BspMI	ACCTGC	1 cut(s)	2304
BspPI	GGATC	4 cut(s)	238, 1388, 1832, 1845
BspTNI	GGTCTC	1 cut(s)	3211
BsrBI	CCGCTC	1 cut(s)	1272
BsrDI	GCAATG	4 cut(s)	546, 1776, 2343, 3357
BsrGI	TGTACA	2 cut(s)	850, 2724
BssECI	CCNNGG	6 cut(s)	174, 709, 918, 1216, 1323, 3387
BssMI	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
BssNI	GRCGYC	1 cut(s)	704
BssT1I	CCWWGG	2 cut(s)	918, 1216
Bst2UI	CCWGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
Bst6I	CTCTTC	1 cut(s)	2067
BstACI	GRCGYC	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	1253
BstAUI	TGTACA	2 cut(s)	850, 2724
BstC8I	GCNNGC	5 cut(s)	1503, 1859, 1984, 2647, 2866
BstDEI	CTNAG	9 cut(s)	6, 67, 318, 612, 1166, 1497, 1680, 1824, 2388
BstDSI	CCRYGG	2 cut(s)	174, 709
BstENI	CCTNNNNNAGG	1 cut(s)	2568
BstFNI	CGCG	1 cut(s)	1088
BstH2I	RGCGCY	2 cut(s)	213, 1665
BstHHI	GCGC	2 cut(s)	212, 1664
BstKTI	GATC	6 cut(s)	246, 396, 1383, 1719, 1840, 3133
BstMAI	GTCTC	7 cut(s)	319, 400, 1020, 1149, 2062, 3211, 3289
BstMBI	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
BstNI	CCWGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
BstPAI	GACNNNNGTC	1 cut(s)	3203
BstSCI	CCNGG	6 cut(s)	1054, 1323, 1407, 2070, 2892, 3318
BstSFI	CTRYAG	8 cut(s)	363, 374, 1605, 2118, 2424, 2883, 3278, 3408
BstUI	CGCG	1 cut(s)	1088
BstV2I	GAAGAC	2 cut(s)	655, 3164
BstX2I	RGATCY	1 cut(s)	1837
BstYI	RGATCY	1 cut(s)	1837
BsuI	GTATCC	1 cut(s)	3108
BsuRI	GGCC	2 cut(s)	1398, 2745
BtgI	CCRYGG	2 cut(s)	174, 709
BtrI	CACGTC	1 cut(s)	3115
BtsI	GCAGTG	2 cut(s)	48, 78
BtsIMutI	CAGTG	9 cut(s)	48, 78, 396, 493, 1535, 2106, 2620, 2826, 3207
BveI	ACCTGC	1 cut(s)	2304
Cac8I	GCNNGC	5 cut(s)	1503, 1859, 1984, 2647, 2866
CciI	TCATGA	3 cut(s)	678, 978, 2203
CfoI	GCGC	2 cut(s)	212, 1664
Cfr13I	GGNCC	2 cut(s)	1814, 2744
CseI	GACGC	4 cut(s)	693, 1094, 1679, 2651
Csp6I	GTAC	8 cut(s)	140, 201, 851, 909, 2115, 2599, 2635, 2725
CviQI	GTAC	8 cut(s)	140, 201, 851, 909, 2115, 2599, 2635, 2725
DdeI	CTNAG	9 cut(s)	6, 67, 318, 612, 1166, 1497, 1680, 1824, 2388
DpnI	GATC	6 cut(s)	245, 395, 1382, 1718, 1839, 3132
DpnII	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
DraI	TTTAAA	1 cut(s)	1140
DriI	GACNNNNNGTC	1 cut(s)	3147
Eam1104I	CTCTTC	1 cut(s)	2067
Eam1105I	GACNNNNNGTC	1 cut(s)	3147
EarI	CTCTTC	1 cut(s)	2067
Eco130I	CCWWGG	2 cut(s)	918, 1216
Eco147I	AGGCCT	1 cut(s)	1398
Eco31I	GGTCTC	1 cut(s)	3211
Eco47I	GGWCC	1 cut(s)	1814
Eco47III	AGCGCT	2 cut(s)	211, 1663
Eco57I	CTGAAG	3 cut(s)	350, 1497, 1643
EcoNI	CCTNNNNNAGG	1 cut(s)	2568
EcoO109I	RGGNCCY	1 cut(s)	2744
EcoRI	GAATTC	2 cut(s)	13, 2218
EcoRII	CCWGG	6 cut(s)	1054, 1323, 1407, 2070, 2892, 3318
EcoT14I	CCWWGG	2 cut(s)	918, 1216
EcoT22I	ATGCAT	1 cut(s)	1040
ErhI	CCWWGG	2 cut(s)	918, 1216
FalI	AAGNNNNNCTT	4 cut(s)	2046, 2078, 2174, 2206
FaqI	GGGAC	2 cut(s)	691, 2059
FauI	CCCGC	1 cut(s)	2299
FauNDI	CATATG	2 cut(s)	1966, 3364
FbaI	TGATCA	2 cut(s)	393, 1716
FblI	GTMKAC	2 cut(s)	2851, 3106
FspBI	CTAG	8 cut(s)	248, 1611, 1703, 2111, 2658, 2948, 3027, 3102
GlaI	GCGC	2 cut(s)	211, 1663
GsaI	CCCAGC	1 cut(s)	2505
GsuI	CTGGAG	4 cut(s)	420, 1602, 2034, 3200
HaeII	RGCGCY	2 cut(s)	213, 1665
HaeIII	GGCC	2 cut(s)	1398, 2745
HapII	CCGG	3 cut(s)	846, 3007, 3039
HgaI	GACGC	4 cut(s)	693, 1094, 1679, 2651
HhaI	GCGC	2 cut(s)	212, 1664
Hin1I	GRCGYC	1 cut(s)	704
Hin6I	GCGC	2 cut(s)	210, 1662
HinP1I	GCGC	2 cut(s)	210, 1662
HincII	GTYRAC	1 cut(s)	2172
HindII	GTYRAC	1 cut(s)	2172
HinfI	GANTC	8 cut(s)	170, 225, 1919, 2047, 2610, 2928, 3023, 3261
HpaII	CCGG	3 cut(s)	846, 3007, 3039
Hpy166II	GTNNAC	7 cut(s)	713, 851, 2172, 2359, 2852, 3107, 3446
Hpy8I	GTNNAC	7 cut(s)	713, 851, 2172, 2359, 2852, 3107, 3446
HpyAV	CCTTC	6 cut(s)	1805, 2197, 2344, 2704, 2735, 3055
HpyCH4IV	ACGT	1 cut(s)	3114
HpyF3I	CTNAG	9 cut(s)	6, 67, 318, 612, 1166, 1497, 1680, 1824, 2388
HpySE526I	ACGT	1 cut(s)	3114
Hsp92I	GRCGYC	1 cut(s)	704
HspAI	GCGC	2 cut(s)	210, 1662
Ksp22I	TGATCA	2 cut(s)	393, 1716
Kzo9I	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
LmnI	GCTCC	8 cut(s)	734, 1057, 1204, 1796, 1847, 2948, 3219, 3322
MaeI	CTAG	8 cut(s)	248, 1611, 1703, 2111, 2658, 2948, 3027, 3102
MaeII	ACGT	1 cut(s)	3114
MaeIII	GTNAC	5 cut(s)	73, 1946, 2559, 3242, 3455
MalI	GATC	6 cut(s)	245, 395, 1382, 1718, 1839, 3132
MbiI	CCGCTC	1 cut(s)	1272
MboI	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
MfeI	CAATTG	4 cut(s)	756, 2496, 2685, 3162
MflI	RGATCY	1 cut(s)	1837
MhlI	GDGCHC	2 cut(s)	528, 1757
MlyI	GAGTC	4 cut(s)	219, 2041, 2922, 3017
MmeI	TCCRAC	4 cut(s)	1243, 1393, 2434, 2905
Mph1103I	ATGCAT	1 cut(s)	1040
MroXI	GAANNNNTTC	5 cut(s)	686, 1364, 1923, 2609, 2974
MslI	CAYNNNNRTG	1 cut(s)	1033
MspI	CCGG	3 cut(s)	846, 3007, 3039
MspR9I	CCNGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
MunI	CAATTG	4 cut(s)	756, 2496, 2685, 3162
Mva1269I	GAATGC	1 cut(s)	1771
MvaI	CCWGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
MvnI	CGCG	1 cut(s)	1088
NdeI	CATATG	2 cut(s)	1966, 3364
NdeII	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
NlaIV	GGNNCC	4 cut(s)	85, 1413, 1839, 3324
NmuCI	GTSAC	3 cut(s)	73, 1946, 3242
NsiI	ATGCAT	1 cut(s)	1040
PagI	TCATGA	3 cut(s)	678, 978, 2203
PceI	AGGCCT	1 cut(s)	1398
PctI	GAATGC	1 cut(s)	1771
PdmI	GAANNNNTTC	5 cut(s)	686, 1364, 1923, 2609, 2974
PfeI	GAWTC	4 cut(s)	170, 1919, 2610, 3261
PfoI	TCCNGGA	1 cut(s)	1054
PleI	GAGTC	4 cut(s)	219, 2041, 2922, 3017
PpsI	GAGTC	4 cut(s)	219, 2041, 2922, 3017
PshAI	GACNNNNGTC	1 cut(s)	3203
PshBI	ATTAAT	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	1865
Psp6I	CCWGG	6 cut(s)	1054, 1323, 1407, 2070, 2892, 3318
PspFI	CCCAGC	1 cut(s)	2501
PspGI	CCWGG	6 cut(s)	1054, 1323, 1407, 2070, 2892, 3318
PspN4I	GGNNCC	4 cut(s)	85, 1413, 1839, 3324
PspPI	GGNCC	2 cut(s)	1814, 2744
PsrI	GAACNNNNNNTAC	2 cut(s)	2538, 2570
PstI	CTGCAG	4 cut(s)	367, 378, 2887, 3412
PsuI	RGATCY	1 cut(s)	1837
RsaI	GTAC	8 cut(s)	141, 202, 852, 910, 2116, 2600, 2636, 2726
RsaNI	GTAC	8 cut(s)	140, 201, 851, 909, 2115, 2599, 2635, 2725
RseI	CAYNNNNRTG	1 cut(s)	1033
Sau3AI	GATC	6 cut(s)	243, 393, 1380, 1716, 1837, 3130
Sau96I	GGNCC	2 cut(s)	1814, 2744
SchI	GAGTC	4 cut(s)	219, 2041, 2922, 3017
ScrFI	CCNGG	6 cut(s)	1056, 1325, 1409, 2072, 2894, 3320
SduI	GDGCHC	2 cut(s)	528, 1757
SfcI	CTRYAG	8 cut(s)	363, 374, 1605, 2118, 2424, 2883, 3278, 3408
SinI	GGWCC	1 cut(s)	1814
SmiMI	CAYNNNNRTG	1 cut(s)	1033
SmlI	CTYRAG	2 cut(s)	1750, 2395
SmoI	CTYRAG	2 cut(s)	1750, 2395
SseBI	AGGCCT	1 cut(s)	1398
SsiI	CCGC	8 cut(s)	1064, 1242, 1272, 1747, 1986, 2068, 2198, 2306
SspI	AATATT	4 cut(s)	447, 1447, 1912, 2991
SspMI	CTAG	8 cut(s)	248, 1611, 1703, 2111, 2658, 2948, 3027, 3102
StuI	AGGCCT	1 cut(s)	1398
StyD4I	CCNGG	6 cut(s)	1054, 1323, 1407, 2070, 2892, 3318
StyI	CCWWGG	2 cut(s)	918, 1216
TaiI	ACGT	1 cut(s)	3117
TaqI	TCGA	4 cut(s)	2039, 2332, 3197, 3264
TatI	WGTACW	4 cut(s)	850, 908, 2598, 2724
TauI	GCSGC	3 cut(s)	1067, 2070, 2200
TfiI	GAWTC	4 cut(s)	170, 1919, 2610, 3261
TscAI	CASTG	9 cut(s)	55, 78, 403, 493, 1542, 2106, 2620, 2826, 3207
TseFI	GTSAC	3 cut(s)	73, 1946, 3242
Tsp45I	GTSAC	3 cut(s)	73, 1946, 3242
TspDTI	ATGAA	9 cut(s)	325, 574, 695, 1510, 1665, 2220, 2397, 2618, 3424
TspGWI	ACGGA	2 cut(s)	191, 2201
TspRI	CASTG	9 cut(s)	55, 78, 403, 493, 1542, 2106, 2620, 2826, 3207
VpaK11BI	GGWCC	1 cut(s)	1814
VspI	ATTAAT	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	2568
XapI	RAATTY	7 cut(s)	13, 1517, 1635, 1675, 2218, 3074, 3120
XmiI	GTMKAC	2 cut(s)	2851, 3106
XmnI	GAANNNNTTC	5 cut(s)	686, 1364, 1923, 2609, 2974
XspI	CTAG	8 cut(s)	248, 1611, 1703, 2111, 2658, 2948, 3027, 3102
Zsp2I	ATGCAT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.