Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Forward (+)

6851151 .. 6856108

Gene Structure 4958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGACAAGTAACATTTTCAAAGAGAAGGAACGGGTTGCTGAAGAAGGCGTACGAGCTCTCCCTTCTCTGTGATGCAGAGGTTGCTCTCATCATCTTCTCTAGCCGTGGCAAGCTCTATGAGTTCTGCAGCGGGCCGAGCATGGAGAAGACACTTGAGAAATATCAAAGATACACTTATGCAGCACTGGAAGCGGGTCAGCCTGCTCAGAATACACAGAGCAGATATGAAGAATATAAGAACCTAAAAGTGAGAGTTGAGGTCCTACAACGTACGCAGAGACGCTTTCTTGGGGAAGATTTGGAAAATTTAGACACAAAGGAGCTTGAGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAACATATACTTGAACAGCTTTCAGATCTTCAGAGGAAGGAAAAGATGCTGCTAGAAGCAAACGATGAATTGAGAAGGAAGTTGGAAGAAAGTAATGAAGGCCTTCAACGTTCCTGGAAAGCAAAGCAGCTAAGTATTCCAAATGGCAACCCGTCTACTGCTCAATCAAATCAAGGTTTATTTGGGCGTTTACAATGCAACAACAATACACCACAGATAGGCCACAGTCGTGAGGTAACAAGTGAGGTAAATGTAGCAACCTCAACCCAAACTCGTAGCGGATTTGTCCCAGAATGGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

245

Amino Acids

28.27

Weight (kDa)

9.28

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.9e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 172	1.3e-24	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	584
AciI	CCGC	3 cut(s)	177, 239, 708
AclI	AACGTT	1 cut(s)	538
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	3 cut(s)	44, 107, 443
AfaI	GTAC	2 cut(s)	98, 319
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	4 cut(s)	66, 406, 443, 536
AjnI	CCWGG	1 cut(s)	542
AleI	CACNNNNGTG	1 cut(s)	657
AluBI	AGCT	7 cut(s)	22, 103, 160, 370, 379, 448, 559
AluI	AGCT	7 cut(s)	22, 103, 160, 370, 379, 448, 559
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	3 cut(s)	179, 529, 649
ApeKI	GCWGC	5 cut(s)	174, 227, 376, 478, 556
ApoI	RAATTY	1 cut(s)	352
Asp700I	GAANNNNTTC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	179, 307
AvaII	GGWCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	5 cut(s)	186, 239, 388, 465, 568
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	3 cut(s)	147, 392, 482
BfmI	CTRYAG	1 cut(s)	172
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	5 cut(s)	175, 228, 377, 479, 557
BlsI	GCNGC	5 cut(s)	176, 229, 378, 480, 558
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	179, 307
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	3 cut(s)	109, 465, 717
BpiI	GAAGAC	1 cut(s)	200
BpuEI	CTTGAG	3 cut(s)	221, 392, 401
BsaJI	CCNNGG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	732
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	5 cut(s)	186, 239, 388, 465, 568
BshFI	GGCC	3 cut(s)	181, 531, 651
BsiHKAI	GWGCWC	1 cut(s)	105
BsiWI	CGTACG	2 cut(s)	96, 317
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	3 cut(s)	181, 531, 651
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	30, 454
BspACI	CCGC	3 cut(s)	177, 239, 708
BspANI	GGCC	3 cut(s)	181, 531, 651
BspCNI	CTCAG	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	176
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	30, 454
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	158, 179, 249
BstDEI	CTNAG	2 cut(s)	252, 560
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	732
BstKTI	GATC	2 cut(s)	33, 457
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	30, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 376
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	5 cut(s)	186, 239, 388, 465, 568
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	181, 531, 651
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	3 cut(s)	158, 179, 249
Cfr13I	GGNCC	2 cut(s)	179, 307
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	97, 318
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	2 cut(s)	97, 318
DdeI	CTNAG	2 cut(s)	252, 560
DpnI	GATC	2 cut(s)	32, 456
DpnII	GATC	2 cut(s)	30, 454
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 443
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	1 cut(s)	190
FaiI	YATR	7 cut(s)	165, 188, 225, 273, 282, 435, 437
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	170, 232
FblI	GTMKAC	1 cut(s)	584
Fnu4HI	GCNGC	5 cut(s)	175, 228, 377, 479, 557
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	5 cut(s)	175, 228, 377, 479, 557
FspBI	CTAG	3 cut(s)	147, 392, 482
GluI	GCNGC	5 cut(s)	175, 228, 377, 479, 557
HaeIII	GGCC	3 cut(s)	181, 531, 651
HgaI	GACGC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	585, 620
Hpy188I	TCNGA	3 cut(s)	255, 454, 462
Hpy188III	TCNNGA	3 cut(s)	34, 420, 659
Hpy8I	GTNNAC	2 cut(s)	585, 620
HpyAV	CCTTC	8 cut(s)	7, 66, 85, 119, 460, 498, 521, 542
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4IV	ACGT	2 cut(s)	316, 538
HpyCH4V	TGCA	4 cut(s)	122, 174, 227, 627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 376
HpyF3I	CTNAG	2 cut(s)	252, 560
HpySE526I	ACGT	2 cut(s)	316, 538
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	30, 454
LmnI	GCTCC	2 cut(s)	19, 367
LpnPI	CCDG	4 cut(s)	218, 261, 529, 556
Lsp1109I	GCAGC	5 cut(s)	186, 239, 388, 465, 568
LweI	GCATC	3 cut(s)	109, 465, 717
MaeI	CTAG	3 cut(s)	147, 392, 482
MaeII	ACGT	2 cut(s)	316, 538
MaeIII	GTNAC	2 cut(s)	55, 664
MalI	GATC	2 cut(s)	32, 456
MboI	GATC	2 cut(s)	30, 454
MboII	GAAGA	9 cut(s)	18, 37, 100, 133, 205, 287, 353, 449, 527
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	352, 497
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	21, 118, 298, 456, 655, 667, 700
MroXI	GAANNNNTTC	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 376
NdeII	GATC	2 cut(s)	30, 454
NlaIII	CATG	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	657
PceI	AGGCCT	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	531
Pfl23II	CGTACG	2 cut(s)	96, 317
PfoI	TCCNGGA	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	176, 229, 378, 480, 558
PpuMI	RGGWCCY	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspLI	CGTACG	2 cut(s)	96, 317
PspPI	GGNCC	2 cut(s)	179, 307
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	2 cut(s)	98, 319
RsaNI	GTAC	2 cut(s)	97, 318
RseI	CAYNNNNRTG	1 cut(s)	657
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	5 cut(s)	175, 228, 377, 479, 557
Sau3AI	GATC	2 cut(s)	30, 454
Sau96I	GGNCC	2 cut(s)	179, 307
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	109, 465, 717
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	3 cut(s)	200, 371, 380
SmoI	CTYRAG	3 cut(s)	200, 371, 380
Sse9I	AATT	2 cut(s)	352, 497
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	3 cut(s)	177, 239, 708
SspMI	CTAG	3 cut(s)	147, 392, 482
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	656
TaiI	ACGT	2 cut(s)	319, 541
TaqI	TCGA	2 cut(s)	33, 49
TasI	AATT	2 cut(s)	352, 497
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	5 cut(s)	174, 227, 376, 478, 556
TspDTI	ATGAA	4 cut(s)	288, 402, 510, 540
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	3 cut(s)	147, 392, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.