Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

29665836 .. 29669372

Gene Structure 3537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGGCAAGTAACATTTGCCAAGAGAAGGAACGGGTTGCTGAAGAAGGCGTGTGAGCTCTCCATTCTCTGTGATGCAGAGGTTGCTCTCATCATCTTCTCCAGCCGTGGCAAGCTCTATGAGTTCTGCAGCGGCCCCAGCATGGAGAAGACAATTGAGAAATATCAAAGATACACTTATGCAGAACTGGAAGCTGCTCAACCTGCTCAGGATACACAGAGCAGATACGAAGAATATGAGAACCTAAAAGCGAAAGTAGAGGTCCTACAACGCACGCAGAGACGTCTTGATGGGGAAAATTTGGAACATTTAGACATAGAGGAGCTTCAGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAAAATATACTTGAACAGCTTTCCGATCTTCAAAAGAAGGAAAAGCTGCTGCTGGAAGCAAACGATGAATTGAGAATGAAGTTGGAAGAGAGTAATGAAGGTCTTCAACGAGGTTCAATAAAAGCAAATCAGCCAAGTATACCAAATGGCCACCCATCTACTGCTCAATCAGCTCAAGGTTTCTTTGAGCGTTTACAATGCAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

213

Amino Acids

24.52

Weight (kDa)

6.78

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	9.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 171	4.2e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	568
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	3 cut(s)	44, 107, 356
AcyI	GRCGYC	1 cut(s)	328
AfiI	CCNNNNNNNGG	2 cut(s)	72, 187
AgsI	TTSAA	5 cut(s)	406, 443, 461, 536, 546
AluBI	AGCT	9 cut(s)	22, 103, 160, 239, 370, 379, 448, 475, 602
AluI	AGCT	9 cut(s)	22, 103, 160, 239, 370, 379, 448, 475, 602
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	2 cut(s)	178, 577
ApeKI	GCWGC	5 cut(s)	174, 239, 376, 475, 478
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	179, 307
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	200, 524
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	5 cut(s)	186, 226, 388, 462, 465
BccI	CCATC	2 cut(s)	329, 592
BceAI	ACGGC	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	6 cut(s)	175, 178, 240, 377, 476, 479
BlsI	GCNGC	6 cut(s)	176, 179, 241, 378, 477, 480
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	179, 307
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	200, 524
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	401, 588
BsaHI	GRCGYC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 187
Bse1I	ACTGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	72, 187
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	186, 226, 388, 462, 465
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	180, 579
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	72, 187
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	180, 579
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	30, 454
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	180, 579
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	30, 454
BssNAI	GTATAC	1 cut(s)	569
BssNI	GRCGYC	1 cut(s)	328
Bst1107I	GTATAC	1 cut(s)	569
Bst6I	CTCTTC	2 cut(s)	20, 510
BstACI	GRCGYC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	158, 320
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	33, 457
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	30, 454
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 183, 248, 376, 599
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	5 cut(s)	186, 226, 388, 462, 465
BstV2I	GAAGAC	2 cut(s)	200, 524
BstZ17I	GTATAC	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	180, 579
BtgI	CCRYGG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	158, 320
Cfr13I	GGNCC	2 cut(s)	179, 307
CviAII	CATG	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	32, 456
DpnII	GATC	2 cut(s)	30, 454
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	20, 510
EarI	CTCTTC	2 cut(s)	20, 510
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 356
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	1 cut(s)	190
FaiI	YATR	7 cut(s)	165, 188, 225, 282, 362, 437, 569
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	6 cut(s)	175, 178, 240, 377, 476, 479
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	6 cut(s)	175, 178, 240, 377, 476, 479
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	6 cut(s)	175, 178, 240, 377, 476, 479
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	180, 579
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	569, 623
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	4 cut(s)	34, 254, 332, 420
Hpy8I	GTNNAC	2 cut(s)	569, 623
HpyAV	CCTTC	5 cut(s)	7, 66, 85, 460, 521
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	4 cut(s)	122, 174, 227, 630
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 183, 248, 376, 599
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	328
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	30, 454
LmnI	GCTCC	2 cut(s)	19, 367
LpnPI	CCDG	6 cut(s)	160, 196, 218, 239, 261, 467
Lsp1109I	GCAGC	5 cut(s)	186, 226, 388, 462, 465
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	32, 456
MboI	GATC	2 cut(s)	30, 454
MboII	GAAGA	9 cut(s)	18, 37, 100, 133, 205, 287, 449, 524, 527
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	3 cut(s)	198, 343, 497
MluNI	TGGCCA	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	5 cut(s)	21, 118, 298, 358, 533
Mox20I	TGGCCA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	5 cut(s)	128, 183, 248, 376, 599
NdeII	GATC	2 cut(s)	30, 454
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	531
PkrI	GCNGC	6 cut(s)	176, 179, 241, 378, 477, 480
PpuMI	RGGWCCY	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	179, 307
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	6 cut(s)	175, 178, 240, 377, 476, 479
Sau3AI	GATC	2 cut(s)	30, 454
Sau96I	GGNCC	2 cut(s)	179, 307
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	380, 603
SmoI	CTYRAG	2 cut(s)	380, 603
Sse9I	AATT	3 cut(s)	198, 343, 497
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	105
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	198, 343, 497
TauI	GCSGC	1 cut(s)	180
TseI	GCWGC	5 cut(s)	174, 239, 376, 475, 478
TspDTI	ATGAA	4 cut(s)	402, 510, 521, 540
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	1 cut(s)	392
ZraI	GACGTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.