Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

10880 .. 15737

Gene Structure 4858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGACAAGTAACATTCGCAAAGAGAAGGAACGGGCTGCTGAAGAAGGCGTACGAGCTCTCCCTTCTCTGTGATGCAGAGATTGCTCTCATCATCTTCTCTAGCCGTGGCAAGCTCTATGAGTTCTGCAGCGGGCCCAGCATGGAGAAGACACTTGAGAAATATCAAAGATACACTTATGCAGCACTGGAAGCGGGTCAGCCTGCTCAGAATACACAGCAGAGCAGATATGAAGAATATGAGAACCTAAAAGTGAAAGTTGAGGTCCTACAACGTACGCAGAGACGCTTTCTTGGGGAAGATTTGGAAAATTTAGACACAAAGGAGCTTGAGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAGCATATACTTGAACAGCTTTCAGATCTTCAGAGAAAGGAAAAGATGCTCCTAGAAGCAAACGATGAATTGAGAAGGAAGTTGGAAGAAAGTAATGAAAGCCTTCAACGTTCCTGGAAAGCAAAGCAGCCAAGTATTCCAAATGGCCACACGTCCACTGCTCAATCAGATGAAGGTTTATTTGAGCGTTTACAATGCAACAACAATACACTGCAGATAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

218

Amino Acids

25.47

Weight (kDa)

8.66

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	7.9e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 173	7.4e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	177, 239
AclI	AACGTT	1 cut(s)	541
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	3 cut(s)	44, 107, 446
AfaI	GTAC	2 cut(s)	98, 322
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	409, 446, 539
AjiI	CACGTC	1 cut(s)	585
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	6 cut(s)	22, 103, 160, 373, 382, 451
AluI	AGCT	6 cut(s)	22, 103, 160, 373, 382, 451
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	2 cut(s)	179, 577
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	5 cut(s)	82, 174, 227, 379, 559
ApoI	RAATTY	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	3 cut(s)	179, 180, 310
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	579
BanII	GRGCYC	2 cut(s)	105, 183
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	5 cut(s)	69, 186, 239, 391, 571
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	3 cut(s)	147, 395, 485
BfmI	CTRYAG	2 cut(s)	172, 644
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	5 cut(s)	83, 175, 228, 380, 560
BlsI	GCNGC	5 cut(s)	84, 176, 229, 381, 561
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	585
BmgT120I	GGNCC	3 cut(s)	179, 180, 310
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	109, 468
BpiI	GAAGAC	1 cut(s)	200
BpuEI	CTTGAG	3 cut(s)	221, 395, 404
BsaJI	CCNNGG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	5 cut(s)	69, 186, 239, 391, 571
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	181, 579
BsiHKAI	GWGCWC	1 cut(s)	105
BsiWI	CGTACG	2 cut(s)	96, 320
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	181, 579
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	105, 183
Bsp143I	GATC	2 cut(s)	30, 457
BspACI	CCGC	2 cut(s)	177, 239
BspANI	GGCC	2 cut(s)	181, 579
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	2 cut(s)	176, 648
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	30, 457
Bst2UI	CCWGG	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	4 cut(s)	158, 179, 249, 434
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	33, 460
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	30, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	2 cut(s)	172, 644
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	5 cut(s)	69, 186, 239, 391, 571
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	181, 579
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	585
BtsI	GCAGTG	2 cut(s)	588, 641
BtsIMutI	CAGTG	3 cut(s)	230, 588, 641
Cac8I	GCNNGC	4 cut(s)	158, 179, 249, 434
Cfr13I	GGNCC	3 cut(s)	179, 180, 310
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	97, 321
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	2 cut(s)	97, 321
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	32, 459
DpnII	GATC	2 cut(s)	30, 457
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	105, 183
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 446
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	105, 183
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	190
FaiI	YATR	7 cut(s)	165, 188, 225, 276, 285, 438, 440
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	170, 232
Fnu4HI	GCNGC	5 cut(s)	83, 175, 228, 380, 560
FriOI	GRGCYC	2 cut(s)	105, 183
Fsp4HI	GCNGC	5 cut(s)	83, 175, 228, 380, 560
FspBI	CTAG	3 cut(s)	147, 395, 485
GluI	GCNGC	5 cut(s)	83, 175, 228, 380, 560
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	181, 579
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	588, 623
Hpy188I	TCNGA	4 cut(s)	255, 457, 465, 601
Hpy188III	TCNNGA	2 cut(s)	34, 423
Hpy8I	GTNNAC	2 cut(s)	588, 623
HpyAV	CCTTC	7 cut(s)	7, 66, 85, 119, 501, 545, 599
HpyCH4IV	ACGT	3 cut(s)	319, 541, 584
HpyCH4V	TGCA	5 cut(s)	122, 174, 227, 630, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	3 cut(s)	319, 541, 584
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	30, 457
LmnI	GCTCC	3 cut(s)	19, 370, 486
LpnPI	CCDG	6 cut(s)	196, 218, 261, 446, 532, 559
Lsp1109I	GCAGC	5 cut(s)	69, 186, 239, 391, 571
LweI	GCATC	2 cut(s)	109, 468
MaeI	CTAG	3 cut(s)	147, 395, 485
MaeII	ACGT	3 cut(s)	319, 541, 584
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	32, 459
MboI	GATC	2 cut(s)	30, 457
MboII	GAAGA	9 cut(s)	18, 37, 100, 133, 205, 290, 356, 452, 530
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	105, 183
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	2 cut(s)	355, 500
MluNI	TGGCCA	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	2 cut(s)	21, 301
Mox20I	TGGCCA	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
NdeII	GATC	2 cut(s)	30, 457
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	534
Pfl23II	CGTACG	2 cut(s)	96, 320
PfoI	TCCNGGA	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	84, 176, 229, 381, 561
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	545
PspLI	CGTACG	2 cut(s)	96, 320
PspN4I	GGNNCC	1 cut(s)	181
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	3 cut(s)	179, 180, 310
PspPPI	RGGWCCY	1 cut(s)	310
PstI	CTGCAG	2 cut(s)	176, 648
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	2 cut(s)	98, 322
RsaNI	GTAC	2 cut(s)	97, 321
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	5 cut(s)	83, 175, 228, 380, 560
Sau3AI	GATC	2 cut(s)	30, 457
Sau96I	GGNCC	3 cut(s)	179, 180, 310
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	2 cut(s)	105, 183
SfaNI	GCATC	2 cut(s)	109, 468
SfcI	CTRYAG	2 cut(s)	172, 644
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	3 cut(s)	200, 374, 383
SmoI	CTYRAG	3 cut(s)	200, 374, 383
Sse9I	AATT	2 cut(s)	355, 500
SsiI	CCGC	2 cut(s)	177, 239
SspMI	CTAG	3 cut(s)	147, 395, 485
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	545
TaiI	ACGT	3 cut(s)	322, 544, 587
TaqI	TCGA	2 cut(s)	33, 49
TasI	AATT	2 cut(s)	355, 500
TscAI	CASTG	3 cut(s)	237, 595, 648
TseI	GCWGC	5 cut(s)	82, 174, 227, 379, 559
TspDTI	ATGAA	5 cut(s)	291, 405, 513, 543, 618
TspRI	CASTG	3 cut(s)	237, 595, 648
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	3 cut(s)	147, 395, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.