Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

59534242 .. 59539614

Gene Structure 5373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGAAGAGGGAAGGTGGAGCTGAAGAGAATCGAGAACAAGATAAATCGACAAGTAACATTCGCAAAGAGAAGGAACGGGCTGCTGAAGAAGGCGTACGAGCTCTCCCTTCTCTGTGATGCAGAGGTTGCTCTCATCATCTTCTCTAGCCGTGGCAAGCTCTATGAGTTCTGCAGCGGGCCCAGCATGGAGAAGACACTTGAGAAATATCAAAGATACACTTATGCAGCACTGGAAGCGGGTCAGCCTGCTCAGAATACACAGCAGAGCAGATATGAAGAATATGAGAACCTAAAAGTGAAAGTTGAGGTCCTACAACATACGCAGAGACGCTTTCTTGGGGAAGATTTGGAAAATTTAGACACAAAGGAGCTTGAGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAACATATACTTGAACAGCTTTCAGATCTTCAGAGGAAGGAAAAGATGCTGCTAGAAGCAAACGATGAATTGAGAAGGAAGTTGGAAGAAAGTAATGAAGGCCTTCAACGTTCCTGGAAAGCAAAGCAGCCAAGTATTCCAAACGGCCACCCGTTTATCGCTCAATCAGATCAAGGTTTATTTGAGCGTTTACAATGCAACAACAATACACTGCAGATAGGCCACGGTCGTGAGGAAACAAGTGAGGTAAATGTAGCAACCTCAACCCAAACTTGTAGCGGATTTATCCCGGAATGGATGTGTGAAGTCTTGATGGTGGTTCTACGGACCAATCGATCAAACACAAGTGAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

262

Amino Acids

30.4

Weight (kDa)

6.93

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 173	1.8e-24	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	177, 239, 711
AclI	AACGTT	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	3 cut(s)	44, 107, 446
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	409, 446, 539
AjnI	CCWGG	1 cut(s)	545
AleI	CACNNNNGTG	1 cut(s)	660
AluBI	AGCT	6 cut(s)	22, 103, 160, 373, 382, 451
AluI	AGCT	6 cut(s)	22, 103, 160, 373, 382, 451
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	322
AoxI	GGCC	4 cut(s)	179, 532, 577, 652
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	6 cut(s)	82, 174, 227, 379, 481, 559
ApoI	RAATTY	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	4 cut(s)	179, 180, 310, 759
AsuC2I	CCSGG	1 cut(s)	722
AvaII	GGWCC	2 cut(s)	310, 759
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	105, 183
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
BccI	CCATC	1 cut(s)	739
BceAI	ACGGC	2 cut(s)	135, 592
BciT130I	CCWGG	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	3 cut(s)	147, 395, 485
BfmI	CTRYAG	3 cut(s)	172, 644, 785
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
BlsI	GCNGC	6 cut(s)	84, 176, 229, 381, 483, 561
Bme1390I	CCNGG	2 cut(s)	547, 722
Bme18I	GGWCC	2 cut(s)	310, 759
BmgT120I	GGNCC	4 cut(s)	179, 180, 310, 759
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	547, 722
BmsI	GCATC	2 cut(s)	109, 468
BpiI	GAAGAC	1 cut(s)	200
BpuEI	CTTGAG	3 cut(s)	221, 395, 404
BpuMI	CCSGG	1 cut(s)	722
Bsa29I	ATCGAT	1 cut(s)	766
BsaJI	CCNNGG	2 cut(s)	151, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	547
BseCI	ATCGAT	1 cut(s)	766
BseDI	CCNNGG	2 cut(s)	151, 655
BseGI	GGATG	1 cut(s)	735
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
BseYI	CCCAGC	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	4 cut(s)	181, 534, 579, 654
BshVI	ATCGAT	1 cut(s)	766
BsiEI	CGRYCG	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	722
BsiWI	CGTACG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	181, 534, 579, 654
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	105, 183
Bsp143I	GATC	3 cut(s)	457, 601, 767
BspACI	CCGC	3 cut(s)	177, 239, 711
BspANI	GGCC	4 cut(s)	181, 534, 579, 654
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	2 cut(s)	176, 648
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	151, 655
BssMI	GATC	3 cut(s)	457, 601, 767
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	158, 179, 249
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	2 cut(s)	151, 655
BstF5I	GGATG	1 cut(s)	735
BstKTI	GATC	3 cut(s)	460, 604, 770
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	457, 601, 767
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	545, 720
BstSFI	CTRYAG	3 cut(s)	172, 644, 785
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
Bsu15I	ATCGAT	1 cut(s)	766
BsuRI	GGCC	4 cut(s)	181, 534, 579, 654
BsuTUI	ATCGAT	1 cut(s)	766
BtgI	CCRYGG	2 cut(s)	151, 655
BtsCI	GGATG	1 cut(s)	735
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	2 cut(s)	230, 641
Cac8I	GCNNGC	3 cut(s)	158, 179, 249
Cfr13I	GGNCC	4 cut(s)	179, 180, 310, 759
ClaI	ATCGAT	1 cut(s)	766
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	459, 603, 769
DpnII	GATC	3 cut(s)	457, 601, 767
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	534
Eco24I	GRGCYC	2 cut(s)	105, 183
Eco47I	GGWCC	2 cut(s)	310, 759
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 446
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	105, 183
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	190
FaiI	YATR	9 cut(s)	165, 188, 225, 276, 285, 321, 438, 440, 787
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	170, 232
Fnu4HI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
FokI	GGATG	1 cut(s)	742
FriOI	GRGCYC	2 cut(s)	105, 183
Fsp4HI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
FspBI	CTAG	3 cut(s)	147, 395, 485
GluI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	4 cut(s)	181, 534, 579, 654
HapII	CCGG	1 cut(s)	722
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	722
Hpy166II	GTNNAC	2 cut(s)	623, 782
Hpy188I	TCNGA	4 cut(s)	255, 457, 465, 601
Hpy188III	TCNNGA	4 cut(s)	34, 423, 662, 742
Hpy8I	GTNNAC	2 cut(s)	623, 782
HpyAV	CCTTC	8 cut(s)	7, 66, 85, 119, 463, 501, 524, 545
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	5 cut(s)	122, 174, 227, 630, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	457, 601, 767
LmnI	GCTCC	2 cut(s)	19, 370
LpnPI	CCDG	6 cut(s)	196, 218, 261, 532, 559, 735
Lsp1109I	GCAGC	6 cut(s)	69, 186, 239, 391, 468, 571
LweI	GCATC	2 cut(s)	109, 468
MaeI	CTAG	3 cut(s)	147, 395, 485
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	459, 603, 769
MboI	GATC	3 cut(s)	457, 601, 767
MboII	GAAGA	9 cut(s)	18, 37, 100, 133, 205, 290, 356, 452, 530
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	105, 183
MluCI	AATT	2 cut(s)	355, 500
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	6 cut(s)	118, 301, 459, 658, 670, 703
MroXI	GAANNNNTTC	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	547, 722
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	4 cut(s)	128, 183, 236, 379
NciI	CCSGG	1 cut(s)	722
NdeII	GATC	3 cut(s)	457, 601, 767
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	660
PceI	AGGCCT	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	30
Pfl23II	CGTACG	1 cut(s)	96
PfoI	TCCNGGA	2 cut(s)	545, 720
PkrI	GCNGC	6 cut(s)	84, 176, 229, 381, 483, 561
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	545
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	181
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	4 cut(s)	179, 180, 310, 759
PspPPI	RGGWCCY	1 cut(s)	310
PstI	CTGCAG	2 cut(s)	176, 648
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	660
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	6 cut(s)	83, 175, 228, 380, 482, 560
Sau3AI	GATC	3 cut(s)	457, 601, 767
Sau96I	GGNCC	4 cut(s)	179, 180, 310, 759
ScrFI	CCNGG	2 cut(s)	547, 722
SduI	GDGCHC	2 cut(s)	105, 183
SfaNI	GCATC	2 cut(s)	109, 468
SfcI	CTRYAG	3 cut(s)	172, 644, 785
SinI	GGWCC	2 cut(s)	310, 759
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	3 cut(s)	200, 374, 383
SmoI	CTYRAG	3 cut(s)	200, 374, 383
Sse9I	AATT	2 cut(s)	355, 500
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	3 cut(s)	177, 239, 711
SspMI	CTAG	3 cut(s)	147, 395, 485
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	545, 720
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	3 cut(s)	33, 49, 766
TasI	AATT	2 cut(s)	355, 500
TfiI	GAWTC	1 cut(s)	30
TscAI	CASTG	2 cut(s)	237, 648
TseI	GCWGC	6 cut(s)	82, 174, 227, 379, 481, 559
TspDTI	ATGAA	4 cut(s)	291, 405, 513, 543
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	2 cut(s)	237, 648
VpaK11BI	GGWCC	2 cut(s)	310, 759
XapI	RAATTY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	3 cut(s)	147, 395, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.