Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

4178459 .. 4184462

Gene Structure 6004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1058600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAATAAGATAAATCGACAGGTAACATTTGCAAAAAGAAGGAAAGGGCTGCTAAAGAAGGCGTACGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCACCCGTGGAAAGCTCTCTGAGTTCTCCAGCGGCCCTAGCATGGCGAAGACGCTTGAGAGGTATCAAAGATGCACTTATGGAGAACTGGGAGCAAGTCAATCTGCTGAGGACGAACAGAGTAGATACCAAGACTACTTGAAGCTAAAAACGAAAGTAGAGGCCCTACAACGCACGCAGAGACATTTTCTTGGGGAAGATTTGGTTCATTTAGGCATGACGGAGCTTCAGCAGCTTGAGAATCAACTCGATATGTCATTGAAGAAAATCAGGTCCACGAAGACCCAATTTATGCATGTTCAGATTTCTGAGCTTCAGAGGAAAGAAGAAATGCTGCTGGAAGCAAACACTGGACTGAGAAGGAAGTTGGAAGAAAGTACTGCTGACCTTCAACGATCATGGAATAGCCATCACCAGGCTGCTCAATTAGAAGGATTCCCTGAGCATTTGCAATTCAACAATACATTGCAGATCGGCTACAGTACTCCAGCAGTAACAAATGATGAGGTGAATGTAGCAACGTCATCGGAACAAAGTCGTCGGGGATTCATCCCTGGTTGGATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

238

Amino Acids

27.24

Weight (kDa)

9.15

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.8e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 172	4.9e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	38
AcuI	CTGAAG	3 cut(s)	44, 356, 443
AfaI	GTAC	3 cut(s)	98, 523, 628
AfiI	CCNNNNNNNGG	2 cut(s)	187, 559
AgsI	TTSAA	4 cut(s)	286, 406, 536, 601
AjnI	CCWGG	2 cut(s)	558, 697
AluBI	AGCT	7 cut(s)	22, 103, 160, 289, 370, 379, 457
AluI	AGCT	7 cut(s)	22, 103, 160, 289, 370, 379, 457
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	2 cut(s)	178, 306
ApeKI	GCWGC	4 cut(s)	82, 376, 478, 563
AspS9I	GGNCC	3 cut(s)	179, 307, 417
AsuHPI	GGTGA	2 cut(s)	548, 664
AvaII	GGWCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	3 cut(s)	133, 200, 431
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	2 cut(s)	123, 252
BbvI	GCAGC	4 cut(s)	69, 388, 465, 550
BccI	CCATC	1 cut(s)	561
BcgI	CGANNNNNNTGC	2 cut(s)	651, 685
BciT130I	CCWGG	2 cut(s)	560, 699
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	622
BisI	GCNGC	5 cut(s)	83, 178, 377, 479, 564
BlsI	GCNGC	5 cut(s)	84, 179, 378, 480, 565
BmcAI	AGTACT	2 cut(s)	523, 628
Bme1390I	CCNGG	2 cut(s)	560, 699
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	179, 307, 417
BmrFI	CCNGG	2 cut(s)	560, 699
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	3 cut(s)	109, 206, 696
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	3 cut(s)	133, 200, 431
BpmI	CTGGAG	2 cut(s)	157, 615
Bpu10I	CCTNAGC	3 cut(s)	123, 252, 585
BpuEI	CTTGAG	2 cut(s)	221, 401
BsaJI	CCNNGG	2 cut(s)	151, 697
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 559
Bse1I	ACTGG	2 cut(s)	237, 499
Bse3DI	GCAATG	1 cut(s)	608
BseBI	CCWGG	2 cut(s)	560, 699
BseDI	CCNNGG	2 cut(s)	151, 697
BseGI	GGATG	2 cut(s)	693, 711
BseLI	CCNNNNNNNGG	2 cut(s)	187, 559
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	7 cut(s)	114, 120, 156, 243, 444, 491, 576
BseNI	ACTGG	2 cut(s)	237, 499
BseXI	GCAGC	4 cut(s)	69, 388, 465, 550
BshFI	GGCC	2 cut(s)	180, 308
BsiHKAI	GWGCWC	1 cut(s)	105
BsiWI	CGTACG	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	187, 559
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	180, 308
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	30, 539, 615
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	180, 308
BspCNI	CTCAG	7 cut(s)	115, 119, 157, 244, 445, 492, 577
BspPI	GGATC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	2 cut(s)	237, 499
BssECI	CCNNGG	2 cut(s)	151, 697
BssMI	GATC	3 cut(s)	30, 539, 615
Bst2UI	CCWGG	2 cut(s)	560, 699
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	7 cut(s)	106, 123, 165, 252, 453, 500, 585
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	693, 711
BstKTI	GATC	3 cut(s)	33, 542, 618
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	30, 539, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 183, 376
BstNI	CCWGG	2 cut(s)	560, 699
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	558, 697
BstSFI	CTRYAG	1 cut(s)	622
BstV1I	GCAGC	4 cut(s)	69, 388, 465, 550
BstV2I	GAAGAC	3 cut(s)	133, 200, 431
BsuRI	GGCC	2 cut(s)	180, 308
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	693, 711
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	179, 307, 417
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	97, 522, 627
CviAII	CATG	4 cut(s)	187, 361, 440, 543
CviQI	GTAC	3 cut(s)	97, 522, 627
DdeI	CTNAG	7 cut(s)	106, 123, 165, 252, 453, 500, 585
DpnI	GATC	3 cut(s)	32, 541, 617
DpnII	GATC	3 cut(s)	30, 539, 615
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 356, 443
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	558, 697
EcoT22I	ATGCAT	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	4 cut(s)	190, 364, 443, 546
FaiI	YATR	7 cut(s)	188, 225, 362, 398, 437, 441, 544
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	4 cut(s)	186, 360, 439, 542
Fnu4HI	GCNGC	5 cut(s)	83, 178, 377, 479, 564
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	5 cut(s)	83, 178, 377, 479, 564
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	5 cut(s)	83, 178, 377, 479, 564
GsuI	CTGGAG	2 cut(s)	157, 615
HaeIII	GGCC	2 cut(s)	180, 308
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	4 cut(s)	190, 364, 443, 546
HinfI	GANTC	3 cut(s)	385, 579, 690
HphI	GGTGA	2 cut(s)	548, 664
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	6 cut(s)	166, 447, 454, 462, 673, 713
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	6 cut(s)	7, 66, 85, 498, 542, 569
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	5 cut(s)	65, 219, 439, 595, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 183, 376
HpyF3I	CTNAG	7 cut(s)	106, 123, 165, 252, 453, 500, 585
HpySE526I	ACGT	1 cut(s)	665
Hsp92II	CATG	4 cut(s)	190, 364, 443, 546
Kzo9I	GATC	3 cut(s)	30, 539, 615
LmnI	GCTCC	3 cut(s)	19, 236, 367
Lsp1109I	GCAGC	4 cut(s)	69, 388, 465, 550
LweI	GCATC	3 cut(s)	109, 206, 696
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	55, 637
MalI	GATC	3 cut(s)	32, 541, 617
MboI	GATC	3 cut(s)	30, 539, 615
MboII	GAAGA	9 cut(s)	18, 37, 133, 205, 353, 418, 436, 482, 527
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	431, 569, 596
MmeI	TCCRAC	2 cut(s)	492, 683
MnlI	CCTC	7 cut(s)	21, 118, 198, 247, 298, 456, 643
Mph1103I	ATGCAT	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	560, 699
MvaI	CCWGG	2 cut(s)	560, 699
MwoI	GCNNNNNNNGC	3 cut(s)	128, 183, 376
NdeII	GATC	3 cut(s)	30, 539, 615
NlaIII	CATG	4 cut(s)	190, 364, 443, 546
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	385, 579, 690
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	84, 179, 378, 480, 565
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	558, 697
PspGI	CCWGG	2 cut(s)	558, 697
PspLI	CGTACG	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	179, 307, 417
RsaI	GTAC	3 cut(s)	98, 523, 628
RsaNI	GTAC	3 cut(s)	97, 522, 627
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	5 cut(s)	83, 178, 377, 479, 564
Sau3AI	GATC	3 cut(s)	30, 539, 615
Sau96I	GGNCC	3 cut(s)	179, 307, 417
ScaI	AGTACT	2 cut(s)	523, 628
ScrFI	CCNGG	2 cut(s)	560, 699
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	109, 206, 696
SfcI	CTRYAG	1 cut(s)	622
SinI	GGWCC	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	200, 380
SmoI	CTYRAG	2 cut(s)	200, 380
Sse9I	AATT	3 cut(s)	431, 569, 596
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	558, 697
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	3 cut(s)	33, 49, 393
TasI	AATT	3 cut(s)	431, 569, 596
TatI	WGTACW	2 cut(s)	521, 626
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	3 cut(s)	385, 579, 690
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	4 cut(s)	82, 376, 478, 563
TspDTI	ATGAA	2 cut(s)	341, 682
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	417
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	1 cut(s)	183
ZrmI	AGTACT	2 cut(s)	523, 628
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.