Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00507

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Forward (+)

119731 .. 124744

Gene Structure 5014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGACAAGTAACATTCGCAAAGAGAAGGAACGGGCTGCTGAAGAAGGCGTACGAGCTCTCCCTTCTCTGTGATGCAGAGATTGCTCTCATCATCTTCTCTAGCCGTGGCAAGCTCTATGAGTTCTGCAGCGGCATGGAGAAGACACTTGAGAAATATCAAAGATACACTTATGCAGCACTGGAAGCGGGTCAGCCTGCTCAGAATACACAGAGCAGATATGAAGAATATGAGAACCTAAAAGTGAAAGTTGAGGTCCTACAACGTACGCAGAGACACAAAGGAGCTTGGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAGCATATACTTGAACAGCTTTCAGATCTTCAGAGAAAGGAAAAGATGCTCCTAGAAGCAAACGATGAATTGAGAAGGAAGTTGGAAGAAAGTAATGAAAGCCTTCAACGTTCCTGGAAAGCAAAGCAGCCAAGTATTCCAAATGGCCACACGTCCACTGCTCAATCAGATGAAGGTTTATTTGAGCGTTTACAATGCAACAACAATACACTGCAGATAGGCCACAGTCGTGAGGTAAATGTAGCAACCTCAACCCAAACTCGTAGCGGATTTGTCCCAGAATGGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

227

Amino Acids

26.45

Weight (kDa)

9.38

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8.4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	113 - 159	1.9e-10	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	177, 233, 657
AclI	AACGTT	1 cut(s)	499
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	535
AcuI	CTGAAG	3 cut(s)	44, 107, 404
AfaI	GTAC	2 cut(s)	98, 313
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	3 cut(s)	367, 404, 497
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	1 cut(s)	503
AleI	CACNNNNGTG	1 cut(s)	618
AluBI	AGCT	6 cut(s)	22, 103, 160, 332, 340, 409
AluI	AGCT	6 cut(s)	22, 103, 160, 332, 340, 409
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	2 cut(s)	535, 610
ApeKI	GCWGC	5 cut(s)	82, 174, 221, 337, 517
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	5 cut(s)	69, 186, 233, 349, 529
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	3 cut(s)	147, 353, 443
BfmI	CTRYAG	2 cut(s)	172, 602
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	6 cut(s)	83, 175, 178, 222, 338, 518
BlsI	GCNGC	6 cut(s)	84, 176, 179, 223, 339, 519
Bme1390I	CCNGG	1 cut(s)	505
Bme18I	GGWCC	1 cut(s)	301
BmgBI	CACGTC	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	109, 426, 666
BpiI	GAAGAC	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	215, 362
BsaJI	CCNNGG	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	5 cut(s)	69, 186, 233, 349, 529
BshFI	GGCC	2 cut(s)	537, 612
BsiHKAI	GWGCWC	1 cut(s)	105
BsiWI	CGTACG	2 cut(s)	96, 311
BslFI	GGGAC	1 cut(s)	650
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	537, 612
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	30, 415
BspACI	CCGC	3 cut(s)	177, 233, 657
BspANI	GGCC	2 cut(s)	537, 612
BspCNI	CTCAG	1 cut(s)	259
BspMAI	CTGCAG	2 cut(s)	176, 606
BspPI	GGATC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	30, 415
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	158, 243, 392
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	681
BstKTI	GATC	2 cut(s)	33, 418
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	2 cut(s)	30, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 230
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstSFI	CTRYAG	2 cut(s)	172, 602
BstV1I	GCAGC	5 cut(s)	69, 186, 233, 349, 529
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	537, 612
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	2 cut(s)	546, 599
BtsIMutI	CAGTG	3 cut(s)	224, 546, 599
Cac8I	GCNNGC	3 cut(s)	158, 243, 392
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	97, 312
CviAII	CATG	1 cut(s)	181
CviQI	GTAC	2 cut(s)	97, 312
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	32, 417
DpnII	GATC	2 cut(s)	30, 415
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	44, 107, 404
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	1 cut(s)	184
FaiI	YATR	7 cut(s)	165, 182, 219, 267, 276, 396, 398
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	6 cut(s)	83, 175, 178, 222, 338, 518
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	6 cut(s)	83, 175, 178, 222, 338, 518
FspBI	CTAG	3 cut(s)	147, 353, 443
GluI	GCNGC	6 cut(s)	83, 175, 178, 222, 338, 518
HaeIII	GGCC	2 cut(s)	537, 612
Hin1II	CATG	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	546, 581
Hpy188I	TCNGA	4 cut(s)	249, 415, 423, 559
Hpy188III	TCNNGA	3 cut(s)	34, 381, 620
Hpy8I	GTNNAC	2 cut(s)	546, 581
HpyAV	CCTTC	7 cut(s)	7, 66, 85, 119, 459, 503, 557
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	3 cut(s)	310, 499, 542
HpyCH4V	TGCA	5 cut(s)	122, 174, 221, 588, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 230
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	3 cut(s)	310, 499, 542
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	30, 415
LmnI	GCTCC	3 cut(s)	19, 329, 444
LpnPI	CCDG	5 cut(s)	212, 255, 404, 490, 517
Lsp1109I	GCAGC	5 cut(s)	69, 186, 233, 349, 529
LweI	GCATC	3 cut(s)	109, 426, 666
MaeI	CTAG	3 cut(s)	147, 353, 443
MaeII	ACGT	3 cut(s)	310, 499, 542
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	32, 417
MboI	GATC	2 cut(s)	30, 415
MboII	GAAGA	8 cut(s)	18, 37, 100, 133, 199, 281, 410, 488
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	1 cut(s)	458
MluNI	TGGCCA	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	4 cut(s)	21, 292, 616, 649
Mox20I	TGGCCA	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	128, 230
NdeII	GATC	2 cut(s)	30, 415
NlaIII	CATG	1 cut(s)	184
OliI	CACNNNNGTG	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	492
Pfl23II	CGTACG	2 cut(s)	96, 311
PfoI	TCCNGGA	1 cut(s)	503
PkrI	GCNGC	6 cut(s)	84, 176, 179, 223, 339, 519
PpuMI	RGGWCCY	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspLI	CGTACG	2 cut(s)	96, 311
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	176, 606
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	98, 313
RsaNI	GTAC	2 cut(s)	97, 312
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	6 cut(s)	83, 175, 178, 222, 338, 518
Sau3AI	GATC	2 cut(s)	30, 415
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	109, 426, 666
SfcI	CTRYAG	2 cut(s)	172, 602
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	194, 341
SmoI	CTYRAG	2 cut(s)	194, 341
Sse9I	AATT	1 cut(s)	458
SsiI	CCGC	3 cut(s)	177, 233, 657
SspMI	CTAG	3 cut(s)	147, 353, 443
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	3 cut(s)	313, 502, 545
TaqI	TCGA	2 cut(s)	33, 49
TasI	AATT	1 cut(s)	458
TauI	GCSGC	1 cut(s)	180
TscAI	CASTG	3 cut(s)	231, 553, 606
TseI	GCWGC	5 cut(s)	82, 174, 221, 337, 517
TspDTI	ATGAA	5 cut(s)	282, 363, 471, 501, 576
TspRI	CASTG	3 cut(s)	231, 553, 606
VpaK11BI	GGWCC	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	3 cut(s)	147, 353, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.