Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Forward (+)

48026701 .. 48042362

Gene Structure 15662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3804 bp

ATGGCTGAGGAGAATCCTTCAGATGGAGATGTAATCACCAAGCAATACACTGCACCAAATAGCCGCTCAGCAGTGGCGGGGGTTTCCAAAGAATGTGAACAAAATATAAGCAAGAGCAAGGAGGATGGAACAAATACAGTACCATATTACAAGCTTTTCTCCTTTGCTGACTCCCTGGATTACCTGTTAATGTCTGTTGGTACAATCAGCGCCATTGGAAATGGACTCTGTATGCCTCTAATGACCATTGTCATGGGAGATGTGATTGATTCATTTGGAGAAACTAGGAACATCAAGGAAGTGTCTAATGCAGTTTCCAAGGTGGCTTTGAAATTCGTTTACTTGGCTCTGGGGGCTGCTGCTGCATCATTTCTACAGATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCACGAATACGAAGTTTATACTTGAAAACCATACTAAGGCAAGATGTCGGCTTCTTTGATCAAGAAATCAACTCTGGGGAAATTGTTGGAAGGATGTCAGGTGATACTGTGCTCATTCAAGAGGCGATGGGTGAGAAGGTAGGAAGTTTTATCCAGTTAGTTGCAACGTTCATAGGTGGCTTTGGTATAGCATTTTTTAAGGGATCACTTCTCACCCTTGTCATGATATCCTCTATTCCCCCTCTAGTCTTATCTACTGCTGTCCTGAACCATTTCATAGTCAAATTGGCGTCCCATGGACAAGCTGCAAATTCAGGAGGAGCAAATGTGGTAGAGGAGACAATTAGTTCAATAAGAACTGTTGCATCATTCACAGGGGAGAAGCAAGCTATATTTAACTATAACTCCTCCTTAAGTAGAGCTTACAAGTCTGGTGTGCAAGAGGGTTGGGCATCTGGTTTGGGTCTCGGTGTGGTTATGCTTATGGTATTCTCTACTTTCGCTTTGGCTATATGGTTTGGCGGAATAATGATACTTGAAAAAGGATATAAAGGAGGAGATGTCATCAATGTGATTATGGCTGTGTTGCTTGGCTCAGTGTCGCTTGGGAAAGCATCTCCTTGCATTAGTGCATTTGCTCCTGGACAAGCTGCAGCATATAAGATGTTTGAGACAATTAACAGAAAGCCGGAGATAGATGCATACAATACTAATGGGCGGGTATTACAAGATATTCGTGGAGACATAGAACTGAGGGATGTTTATTTTAGCTACCCCGCAAGAATGGATGAGCAAATATTCCATGGATTTTGTCTCTCTATACCTAGTGGTGCAACTGCTGCTTTGGTTGGACAGAGCGGAAGTGGTAAATCAACTGTAATCAGTTTGATTGAGAGATTTTATGACCCACAGGCTGGTGAAGTTCTTATTGACGGTGTCAATCTCAAAGAGTTCCAGCTGAAATGGATCAGGCAGAAAATAGGTCTTGTCAGCCAGGAACCTGTTTTGTTTACTTGCAGCATTAGAGATAATATTGGCTATGGGAAGGATGGTGCAACTACTGAAGAAATAAGGGCTGCTGCTGAGCTTGCCAATGCAGCTAAATTCATAGATTTACTCCCTCAGGGAATAGACACAGTAGTCGGTCAGCATGGAACTCAGCTATCTGGGGGACAAAAGCAAAGAGTTGCTATAGCTAGAGCAATTCTGAAGAACCCAAGAATTCTACTTTTAGATGAAGCCACAAGCGCTCTTGATGCAGAATCCGAACGAGTTGTGGAGGAGGCACTGGATAGAATTATGGTGAACCGGACTACTGTCATTGTAGCCCATCGCCTGAGTACAGTAAGGAATGCTGATACCATTGCTGTCATACATCGAGGAGTAATTGTTGAGCAAGGACCGCATTCAGAGCTAACTAAGGACCCTGATGGTGCATATCACCAGCTTATAAGGTTGCAAAAAAATATCACTGTGTCAAAACATAGTGGTCTAGATGTCCAGGATTCTATCTTACCCTTTGTAAGAGAGGAATCATCTCCAAGAAGAAATAGTATTCCTTCTGCAAGCGGTATGCTTGAAACAGCACCTGTAGGGCCTGATATTCCTGCTACAGTTCTATCAAAAGGGCAGCCAAAGTTTTCACTTGGCCAACTTGCTTACCTGAACAAGCCAGAGATCCCAATTATATTACTAGGGACAATAGCTGCATCAGTTAATGGGGCAGTCTTCCCTGTTTTTGGGAGTTTACTGGCAAGTGTAATCAAGACGTTCTTTGAGTCACCTCATGAACTCCGTAAGGATTCAAAGTTTTGGGCCTTAATGTTTTTGGTTCTTGGAACGGCATCTTTGTTGGCCAATCCATCAAGAGCATACCTTTTTGCGGTGGCAGGATGTAGGCTAATAAGAAGAGTCCGAGCAATGTGCTTTGAGAAGGTGGTTTATATGGAAGTAAGTTGGTTTGATGAAGCTGAACACTCAAGTGGTGCAATTGGTGCAAGGCTTTCTACGGATGCAGCGTCTTTGAGAGGGCTCGTTGGAGATGCTCTTGGTTTGGTTGTTCAGAATACAGCAACTGCAATTGCTGGGCTGATCATTGCTTTTGTTGCAGATTGGCAACTGGCTCTTATAATCCTTGTTCTGTTACCTTTATTAGGAGTAAATGGATATATTCAAGTCCAATTCACGAAAGGATTCAGTGCAGATGCAAAGAAAATGTATGAAGATGCGAGCCAAATAGCCAATGATGCTGTGGGGAGTATTCGGACAATTGCTTCCTTTTGTGCTGAAGAGAAGGTGATTGAATTGTACCAGAAAAAATTTGAAGGCCCTGTTAAGGCAGGGATAAGACAAGGATTAGTTACAGGGATAGGTTTTGGGCTATCACTATTTTTGCAGTTTTCAGTGTTTGCCTTAAGCTTTTATACTGGAGGTCTACTTGTTGGGGCAGGCAAGACAACATTCTCTGCTGTTTTCCAGGTTTTCTTTGCTCTCACTATGACTTCTATTGGACTTGCTCAAGCGACCTCCCTAGCACCTGATGCAAGTAAAGGAAGGGCCTCTGCTGCTTCCATATTCGCAATTCTTGACCGGAAATCAAAAATAGACTCTAGTGATAACTCTGGGATGACTATAGAACACTTGAAGGGAGAAATTGAATTTCACCATGTCAGTTTCAAGTATCCCAGTAGACCTGACGTGCATATTTTCAACAATCTTCGCTTGACCATTAGTCATGGCAAGACAATTGCTCTGGTTGGTGAAAGTGGAAGTGGGAAATCAACAGTGATCTCATTGATTCAAAGATTTTACAATCCTAATTCAGGTCACATTACATTGGATGGAATCAAAATCCAAAAACTGCAATTGAAATGGTTGAGGCAGCAAATGGGGCTGGTGAGCCAGGAGCCTCTGCTGTTTAACGACACTATCCGAGCCAACATTGCATATGGAAAGGATGGAGAGGCAACCGAGGCTGACATTACAGCTGCTGCAGAACTCGCAAATGCACACCAGTTCATTAGTAGTTTACAACATGGTTACGATACAATAACTGGTGAGCGAGGGGTCCAATTGTCCGGCGGACAGAAGCAAAGAATTGCTATTGCACGGGCTATTATGAAGGCACCAAAGATATTACTACTAGATGAAGCCACAAGTGCCCTTGATGCTGAATCTGAACGTGTGGTTCAAGATGCATTGGACCGAATTATGGTGGATCGGACAACAATCGTGGTTGCTCACCGGTTATCCACAATTAAGGGTGCAGATTTAATTGCTGTGGTCAAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGGAACTTTGATCAATATCAGCAATGGCATTTATGCTTCTTTGGTAGCTTTACATGCAAGTGCCTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

1267

Amino Acids

136.1

Weight (kDa)

7.33

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	66 - 338	1.7e-54	ABC transporter transmembrane region
ABC_tran	PF00005	408 - 554	1.6e-32	ABC transporter
ABC_membrane	PF00664	701 - 973	1.3e-56	ABC transporter transmembrane region
ABC_tran	PF00005	1041 - 1191	2.4e-34	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1865, 2543
AasI	GACNNNNNNGTC	1 cut(s)	1553
AccB1I	GGYRCC	1 cut(s)	3538
AccB7I	CCANNNNNTGG	1 cut(s)	1328
AccBSI	CCGCTC	2 cut(s)	66, 1272
AccI	GTMKAC	2 cut(s)	2848, 3103
AclI	AACGTT	1 cut(s)	581
AclWI	GGATC	4 cut(s)	625, 1388, 2086, 3639
AcoI	YGGCCR	2 cut(s)	2062, 2268
AcsI	RAATTY	6 cut(s)	332, 724, 1517, 1635, 2732, 3071
AcuI	CTGAAG	3 cut(s)	1497, 1643, 2721
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	4 cut(s)	141, 202, 1756, 2723
AfeI	AGCGCT	1 cut(s)	1663
AfiI	CCNNNNNNNGG	9 cut(s)	23, 450, 1328, 2153, 2296, 2567, 2749, 3236, 3625
AflII	CTTAAG	2 cut(s)	826, 2827
AflIII	ACRYGT	1 cut(s)	3595
AgeI	ACCGGT	1 cut(s)	3657
AhdI	GACNNNNNGTC	1 cut(s)	3144
AjiI	CACGTC	1 cut(s)	3112
AjnI	CCWGG	6 cut(s)	174, 1054, 1407, 1914, 2889, 3315
AleI	CACNNNNGTG	1 cut(s)	2394
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	6 cut(s)	400, 746, 884, 1079, 1149, 1232
AlwI	GGATC	4 cut(s)	625, 1388, 2086, 3639
AlwNI	CAGNNNCTG	3 cut(s)	2003, 2489, 3404
Aor51HI	AGCGCT	1 cut(s)	1663
AoxI	GGCC	6 cut(s)	2009, 2062, 2229, 2268, 2740, 2970
ApoI	RAATTY	6 cut(s)	332, 724, 1517, 1635, 2732, 3071
ArsI	GACNNNNNNTTYG	2 cut(s)	3693, 3725
AsiGI	ACCGGT	1 cut(s)	3657
Asp700I	GAANNNNTTC	2 cut(s)	686, 2606
AspLEI	GCGC	2 cut(s)	212, 1664
AspS9I	GGNCC	8 cut(s)	1814, 1837, 2009, 2229, 2741, 2970, 3481, 3616
AvaII	GGWCC	4 cut(s)	1814, 1837, 3481, 3616
AxyI	CCTNAGG	1 cut(s)	1536
BaeGI	GKGCMC	1 cut(s)	3577
BalI	TGGCCA	2 cut(s)	2064, 2270
BanI	GGYRCC	1 cut(s)	3538
BanII	GRGCYC	1 cut(s)	2448
BbsI	GAAGAC	1 cut(s)	2134
Bbv12I	GWGCWC	1 cut(s)	528
BbvCI	CCTCAGC	1 cut(s)	6
BccI	CCATC	9 cut(s)	17, 119, 535, 1457, 1752, 1838, 2284, 3248, 3365
BceAI	ACGGC	1 cut(s)	2271
BcgI	CGANNNNNNTGC	2 cut(s)	2319, 2353
BciT130I	CCWGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
BciVI	GTATCC	1 cut(s)	3105
BclI	TGATCA	4 cut(s)	393, 472, 2505, 3741
BcoDI	GTCTC	6 cut(s)	400, 746, 884, 1079, 1149, 1232
BfaI	CTAG	9 cut(s)	285, 659, 1239, 1611, 1907, 2108, 2945, 3024, 3557
BfmI	CTRYAG	7 cut(s)	374, 1065, 1605, 2004, 2025, 3045, 3405
BfoI	RGCGCY	2 cut(s)	213, 1665
BfrI	CTTAAG	2 cut(s)	826, 2827
BfuI	GTATCC	1 cut(s)	3105
BlpI	GCTNAGC	2 cut(s)	67, 1497
Bme1390I	CCNGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
Bme18I	GGWCC	4 cut(s)	1814, 1837, 3481, 3616
BmeRI	GACNNNNNGTC	1 cut(s)	3144
BmgBI	CACGTC	1 cut(s)	3112
BmgT120I	GGNCC	8 cut(s)	1814, 1837, 2009, 2229, 2741, 2970, 3481, 3616
BmiI	GGNNCC	5 cut(s)	1413, 1839, 3321, 3482, 3540
BmrFI	CCNGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
BmrI	ACTGGG	1 cut(s)	3093
BmuI	ACTGGG	1 cut(s)	3093
BoxI	GACNNNNGTC	2 cut(s)	248, 1730
BpiI	GAAGAC	1 cut(s)	2134
BpmI	CTGGAG	2 cut(s)	420, 2862
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu1102I	GCTNAGC	2 cut(s)	67, 1497
BpuEI	CTTGAG	2 cut(s)	2377, 2916
BsaBI	GATNNNNATC	1 cut(s)	3746
BsaHI	GRCGYC	1 cut(s)	704
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	5 cut(s)	174, 318, 709, 1216, 3384
BsaWI	WCCGGW	3 cut(s)	1722, 3003, 3657
BsaXI	ACNNNNNCTCC	8 cut(s)	726, 756, 803, 833, 960, 990, 1788, 1818
Bsc4I	CCNNNNNNNGG	9 cut(s)	23, 450, 1328, 2153, 2296, 2567, 2749, 3236, 3625
Bse118I	RCCGGY	1 cut(s)	3657
Bse1I	ACTGG	9 cut(s)	403, 568, 1707, 2169, 2538, 2845, 3099, 3427, 3472
Bse21I	CCTNAGG	1 cut(s)	1536
Bse3DI	GCAATG	6 cut(s)	1776, 2340, 2508, 3354, 3711, 3760
Bse8I	GATNNNNATC	1 cut(s)	3746
BseBI	CCWGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
BseDI	CCNNGG	5 cut(s)	174, 318, 709, 1216, 3384
BseJI	GATNNNNATC	1 cut(s)	3746
BseLI	CCNNNNNNNGG	9 cut(s)	23, 450, 1328, 2153, 2296, 2567, 2749, 3236, 3625
BseMI	GCAATG	6 cut(s)	1776, 2340, 2508, 3354, 3711, 3760
BseMII	CTCAG	7 cut(s)	81, 1023, 1157, 1488, 1550, 1586, 1742
BseNI	ACTGG	9 cut(s)	403, 568, 1707, 2169, 2538, 2845, 3099, 3427, 3472
BseRI	GAGGAG	7 cut(s)	23, 747, 764, 811, 984, 1709, 1809
BseSI	GKGCMC	1 cut(s)	3577
BseYI	CCCAGC	1 cut(s)	2498
BsgI	GTGCAG	4 cut(s)	36, 399, 2634, 3699
BshFI	GGCC	6 cut(s)	2011, 2064, 2231, 2270, 2742, 2972
BshNI	GGYRCC	1 cut(s)	3538
BshTI	ACCGGT	1 cut(s)	3657
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	5 cut(s)	1103, 1723, 3004, 3492, 3658
BslFI	GGGAC	3 cut(s)	691, 1599, 2125
BslI	CCNNNNNNNGG	9 cut(s)	23, 450, 1328, 2153, 2296, 2567, 2749, 3236, 3625
BsmAI	GTCTC	6 cut(s)	400, 746, 884, 1079, 1149, 1232
BsmFI	GGGAC	3 cut(s)	691, 1599, 2125
BsmI	GAATGC	2 cut(s)	1771, 1819
BsnI	GGCC	6 cut(s)	2011, 2064, 2231, 2270, 2742, 2972
Bso31I	GGTCTC	1 cut(s)	884
Bsp1286I	GDGCHC	3 cut(s)	528, 2448, 3577
Bsp143I	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
Bsp1720I	GCTNAGC	2 cut(s)	67, 1497
Bsp19I	CCATGG	2 cut(s)	709, 1216
BspANI	GGCC	6 cut(s)	2011, 2064, 2231, 2270, 2742, 2972
BspCNI	CTCAG	7 cut(s)	80, 1022, 1158, 1489, 1549, 1585, 1743
BspHI	TCATGA	2 cut(s)	636, 2200
BspLI	GGNNCC	5 cut(s)	1413, 1839, 3321, 3482, 3540
BspMAI	CTGCAG	2 cut(s)	1069, 3409
BspPI	GGATC	4 cut(s)	625, 1388, 2086, 3639
BspT107I	GGYRCC	1 cut(s)	3538
BspTI	CTTAAG	2 cut(s)	826, 2827
BspTNI	GGTCTC	1 cut(s)	884
BsrBI	CCGCTC	2 cut(s)	66, 1272
BsrDI	GCAATG	6 cut(s)	1776, 2340, 2508, 3354, 3711, 3760
BsrFI	RCCGGY	1 cut(s)	3657
BsrI	ACTGG	9 cut(s)	403, 568, 1707, 2169, 2538, 2845, 3099, 3427, 3472
BssAI	RCCGGY	1 cut(s)	3657
BssECI	CCNNGG	5 cut(s)	174, 318, 709, 1216, 3384
BssMI	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
BssNI	GRCGYC	1 cut(s)	704
BssT1I	CCWWGG	3 cut(s)	318, 709, 1216
Bst2UI	CCWGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
Bst6I	CTCTTC	2 cut(s)	2317, 2697
BstACI	GRCGYC	1 cut(s)	704
BstAFI	CTTAAG	2 cut(s)	826, 2827
BstAPI	GCANNNNNTGC	3 cut(s)	1253, 2408, 2954
BstC8I	GCNNGC	5 cut(s)	801, 1503, 1981, 2644, 2863
BstDSI	CCRYGG	2 cut(s)	709, 1216
BstENI	CCTNNNNNAGG	2 cut(s)	2565, 3234
BstH2I	RGCGCY	2 cut(s)	213, 1665
BstHHI	GCGC	2 cut(s)	212, 1664
BstKTI	GATC	9 cut(s)	396, 475, 620, 1383, 2094, 2508, 3204, 3634, 3744
BstMAI	GTCTC	6 cut(s)	400, 746, 884, 1079, 1149, 1232
BstMBI	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
BstNI	CCWGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
BstNSI	RCATGY	1 cut(s)	3788
BstPAI	GACNNNNGTC	2 cut(s)	248, 1730
BstSCI	CCNGG	6 cut(s)	174, 1054, 1407, 1914, 2889, 3315
BstSFI	CTRYAG	7 cut(s)	374, 1065, 1605, 2004, 2025, 3045, 3405
BstSLI	GKGCMC	1 cut(s)	3577
BstV2I	GAAGAC	1 cut(s)	2134
BstX2I	RGATCY	1 cut(s)	2091
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	2091
Bsu36I	CCTNAGG	1 cut(s)	1536
BsuI	GTATCC	1 cut(s)	3105
BsuRI	GGCC	6 cut(s)	2011, 2064, 2231, 2270, 2742, 2972
BtgI	CCRYGG	2 cut(s)	709, 1216
BtgZI	GCGATG	2 cut(s)	554, 1730
BtrI	CACGTC	1 cut(s)	3112
BtsI	GCAGTG	2 cut(s)	48, 78
BtsIMutI	CAGTG	9 cut(s)	48, 78, 396, 1017, 1700, 1884, 2617, 2823, 3204
Cac8I	GCNNGC	5 cut(s)	801, 1503, 1981, 2644, 2863
CaiI	CAGNNNCTG	3 cut(s)	2003, 2489, 3404
CciI	TCATGA	2 cut(s)	636, 2200
CfoI	GCGC	2 cut(s)	212, 1664
Cfr10I	RCCGGY	1 cut(s)	3657
Cfr13I	GGNCC	8 cut(s)	1814, 1837, 2009, 2229, 2741, 2970, 3481, 3616
CseI	GACGC	2 cut(s)	693, 2421
Csp6I	GTAC	4 cut(s)	140, 201, 1755, 2722
CspAI	ACCGGT	1 cut(s)	3657
CspCI	CAANNNNNGTGG	2 cut(s)	3627, 3662
CviQI	GTAC	4 cut(s)	140, 201, 1755, 2722
DpnI	GATC	9 cut(s)	395, 474, 619, 1382, 2093, 2507, 3203, 3633, 3743
DpnII	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
DrdI	GACNNNNNNGTC	1 cut(s)	1553
DriI	GACNNNNNGTC	1 cut(s)	3144
DseDI	GACNNNNNNGTC	1 cut(s)	1553
EaeI	YGGCCR	2 cut(s)	2062, 2268
Eam1104I	CTCTTC	2 cut(s)	2317, 2697
Eam1105I	GACNNNNNGTC	1 cut(s)	3144
EarI	CTCTTC	2 cut(s)	2317, 2697
EciI	GGCGGA	2 cut(s)	951, 3510
Eco130I	CCWWGG	3 cut(s)	318, 709, 1216
Eco24I	GRGCYC	1 cut(s)	2448
Eco31I	GGTCTC	1 cut(s)	884
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	4 cut(s)	1814, 1837, 3481, 3616
Eco47III	AGCGCT	1 cut(s)	1663
Eco57I	CTGAAG	3 cut(s)	1497, 1643, 2721
Eco81I	CCTNAGG	1 cut(s)	1536
EcoNI	CCTNNNNNAGG	2 cut(s)	2565, 3234
EcoO109I	RGGNCCY	4 cut(s)	1837, 2009, 2741, 2970
EcoRI	GAATTC	1 cut(s)	1635
EcoRII	CCWGG	6 cut(s)	174, 1054, 1407, 1914, 2889, 3315
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	3 cut(s)	318, 709, 1216
EcoT22I	ATGCAT	2 cut(s)	1117, 3613
EcoT38I	GRGCYC	1 cut(s)	2448
ErhI	CCWWGG	3 cut(s)	318, 709, 1216
FalI	AAGNNNNNCTT	4 cut(s)	820, 852, 2171, 2203
FaqI	GGGAC	3 cut(s)	691, 1599, 2125
FauI	CCCGC	3 cut(s)	70, 1125, 1198
FauNDI	CATATG	1 cut(s)	3361
FbaI	TGATCA	4 cut(s)	393, 472, 2505, 3741
FblI	GTMKAC	2 cut(s)	2848, 3103
FriOI	GRGCYC	1 cut(s)	2448
FspBI	CTAG	9 cut(s)	285, 659, 1239, 1611, 1907, 2108, 2945, 3024, 3557
GlaI	GCGC	2 cut(s)	211, 1663
GsaI	CCCAGC	1 cut(s)	2502
GsuI	CTGGAG	2 cut(s)	420, 2862
HaeII	RGCGCY	2 cut(s)	213, 1665
HaeIII	GGCC	6 cut(s)	2011, 2064, 2231, 2270, 2742, 2972
HapII	CCGG	5 cut(s)	1103, 1723, 3004, 3492, 3658
HgaI	GACGC	2 cut(s)	693, 2421
HhaI	GCGC	2 cut(s)	212, 1664
Hin1I	GRCGYC	1 cut(s)	704
Hin6I	GCGC	2 cut(s)	210, 1662
HinP1I	GCGC	2 cut(s)	210, 1662
HindIII	AAGCTT	2 cut(s)	152, 2830
HpaII	CCGG	5 cut(s)	1103, 1723, 3004, 3492, 3658
Hpy166II	GTNNAC	8 cut(s)	98, 340, 1425, 1720, 2162, 2849, 3104, 3443
Hpy8I	GTNNAC	8 cut(s)	98, 340, 1425, 1720, 2162, 2849, 3104, 3443
HpyCH4IV	ACGT	4 cut(s)	581, 2183, 3111, 3595
HpySE526I	ACGT	4 cut(s)	581, 2183, 3111, 3595
Hsp92I	GRCGYC	1 cut(s)	704
HspAI	GCGC	2 cut(s)	210, 1662
Ksp22I	TGATCA	4 cut(s)	393, 472, 2505, 3741
Kzo9I	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
LmnI	GCTCC	3 cut(s)	734, 1057, 3319
MaeI	CTAG	9 cut(s)	285, 659, 1239, 1611, 1907, 2108, 2945, 3024, 3557
MaeII	ACGT	4 cut(s)	581, 2183, 3111, 3595
MaeIII	GTNAC	5 cut(s)	2193, 2556, 2773, 3239, 3452
MalI	GATC	9 cut(s)	395, 474, 619, 1382, 2093, 2507, 3203, 3633, 3743
MbiI	CCGCTC	2 cut(s)	66, 1272
MboI	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
MboII	GAAGA	8 cut(s)	1490, 1636, 1971, 2134, 2334, 2648, 2714, 3122
MfeI	CAATTG	6 cut(s)	2403, 2493, 2682, 3159, 3278, 3485
MflI	RGATCY	1 cut(s)	2091
MhlI	GDGCHC	3 cut(s)	528, 2448, 3577
MlsI	TGGCCA	2 cut(s)	2064, 2270
MluNI	TGGCCA	2 cut(s)	2064, 2270
MlyI	GAGTC	6 cut(s)	164, 219, 2201, 2334, 3014, 3717
MmeI	TCCRAC	3 cut(s)	481, 1243, 2431
Mox20I	TGGCCA	2 cut(s)	2064, 2270
Mph1103I	ATGCAT	2 cut(s)	1117, 3613
MroXI	GAANNNNTTC	2 cut(s)	686, 2606
MscI	TGGCCA	2 cut(s)	2064, 2270
MslI	CAYNNNNRTG	4 cut(s)	251, 983, 2394, 3789
Msp20I	TGGCCA	2 cut(s)	2064, 2270
MspA1I	CMGCKG	2 cut(s)	1372, 3401
MspCI	CTTAAG	2 cut(s)	826, 2827
MspI	CCGG	5 cut(s)	1103, 1723, 3004, 3492, 3658
MspR9I	CCNGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
MunI	CAATTG	6 cut(s)	2403, 2493, 2682, 3159, 3278, 3485
Mva1269I	GAATGC	2 cut(s)	1771, 1819
MvaI	CCWGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
NcoI	CCATGG	2 cut(s)	709, 1216
NdeI	CATATG	1 cut(s)	3361
NdeII	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
NlaIV	GGNNCC	5 cut(s)	1413, 1839, 3321, 3482, 3540
NmuCI	GTSAC	2 cut(s)	2193, 3239
NsiI	ATGCAT	2 cut(s)	1117, 3613
NspI	RCATGY	1 cut(s)	3788
OliI	CACNNNNGTG	1 cut(s)	2394
PagI	TCATGA	2 cut(s)	636, 2200
PcsI	WCGNNNNNNNCGW	1 cut(s)	2429
PctI	GAATGC	2 cut(s)	1771, 1819
PdmI	GAANNNNTTC	2 cut(s)	686, 2606
PflFI	GACNNNGTC	1 cut(s)	1349
PflMI	CCANNNNNTGG	1 cut(s)	1328
PfoI	TCCNGGA	2 cut(s)	1054, 1914
PinAI	ACCGGT	1 cut(s)	3657
PleI	GAGTC	6 cut(s)	164, 219, 2200, 2333, 3014, 3716
PpsI	GAGTC	6 cut(s)	164, 219, 2200, 2333, 3014, 3716
PpuMI	RGGWCCY	1 cut(s)	1837
PshAI	GACNNNNGTC	2 cut(s)	248, 1730
PsiI	TTATAA	2 cut(s)	1865, 2543
Psp1406I	AACGTT	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	1837
Psp6I	CCWGG	6 cut(s)	174, 1054, 1407, 1914, 2889, 3315
PspFI	CCCAGC	1 cut(s)	2498
PspGI	CCWGG	6 cut(s)	174, 1054, 1407, 1914, 2889, 3315
PspN4I	GGNNCC	5 cut(s)	1413, 1839, 3321, 3482, 3540
PspPI	GGNCC	8 cut(s)	1814, 1837, 2009, 2229, 2741, 2970, 3481, 3616
PspPPI	RGGWCCY	1 cut(s)	1837
PstI	CTGCAG	2 cut(s)	1069, 3409
PstNI	CAGNNNCTG	3 cut(s)	2003, 2489, 3404
PsuI	RGATCY	1 cut(s)	2091
PsyI	GACNNNGTC	1 cut(s)	1349
PvuII	CAGCTG	2 cut(s)	1372, 3401
RsaI	GTAC	4 cut(s)	141, 202, 1756, 2723
RsaNI	GTAC	4 cut(s)	140, 201, 1755, 2722
RseI	CAYNNNNRTG	4 cut(s)	251, 983, 2394, 3789
Sau3AI	GATC	9 cut(s)	393, 472, 617, 1380, 2091, 2505, 3201, 3631, 3741
Sau96I	GGNCC	8 cut(s)	1814, 1837, 2009, 2229, 2741, 2970, 3481, 3616
SchI	GAGTC	6 cut(s)	164, 219, 2201, 2334, 3014, 3717
ScrFI	CCNGG	6 cut(s)	176, 1056, 1409, 1916, 2891, 3317
SduI	GDGCHC	3 cut(s)	528, 2448, 3577
SfcI	CTRYAG	7 cut(s)	374, 1065, 1605, 2004, 2025, 3045, 3405
SinI	GGWCC	4 cut(s)	1814, 1837, 3481, 3616
SmiMI	CAYNNNNRTG	4 cut(s)	251, 983, 2394, 3789
SmlI	CTYRAG	4 cut(s)	826, 2392, 2827, 2931
SmoI	CTYRAG	4 cut(s)	826, 2392, 2827, 2931
SspI	AATATT	2 cut(s)	1212, 1447
SspMI	CTAG	9 cut(s)	285, 659, 1239, 1611, 1907, 2108, 2945, 3024, 3557
StyD4I	CCNGG	6 cut(s)	174, 1054, 1407, 1914, 2889, 3315
StyI	CCWWGG	3 cut(s)	318, 709, 1216
TaiI	ACGT	4 cut(s)	584, 2186, 3114, 3598
TaqI	TCGA	1 cut(s)	1792
TaqII	GACCGA	2 cut(s)	1547, 3633
TatI	WGTACW	1 cut(s)	1754
TauI	GCSGC	1 cut(s)	66
TscAI	CASTG	9 cut(s)	55, 78, 403, 1017, 1707, 1891, 2617, 2823, 3204
TseFI	GTSAC	2 cut(s)	2193, 3239
Tsp45I	GTSAC	2 cut(s)	2193, 3239
TspGWI	ACGGA	2 cut(s)	2198, 2438
TspRI	CASTG	9 cut(s)	55, 78, 403, 1017, 1707, 1891, 2617, 2823, 3204
Tth111I	GACNNNGTC	1 cut(s)	1349
Van91I	CCANNNNNTGG	1 cut(s)	1328
Vha464I	CTTAAG	2 cut(s)	826, 2827
VpaK11BI	GGWCC	4 cut(s)	1814, 1837, 3481, 3616
XagI	CCTNNNNNAGG	2 cut(s)	2565, 3234
XapI	RAATTY	6 cut(s)	332, 724, 1517, 1635, 2732, 3071
XbaI	TCTAGA	1 cut(s)	1906
XceI	RCATGY	1 cut(s)	3788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2662
XmiI	GTMKAC	2 cut(s)	2848, 3103
XmnI	GAANNNNTTC	2 cut(s)	686, 2606
XspI	CTAG	9 cut(s)	285, 659, 1239, 1611, 1907, 2108, 2945, 3024, 3557
Zsp2I	ATGCAT	2 cut(s)	1117, 3613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.