Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006986

Physical Location & Seq

Genomic Coordinates Reverse (-)

58367158 .. 58370993

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATTATATACAGCATGGAGAAGACACTTGAGAAATATCGAAGATACACTTATGCAGCACTGGAAGCGGGTCAGCCTGCTCAGAATACACAGAGCAGATATGAAGAATATGAGAACCTAAAAGTGAAAGTTGAGGTCCTACAACGTACGCAGAGACGCTTTCTTGGGGAAGATTTGGAAAATTTAGACACAAAGGAGCTTGAGCAGCTTGAGAATGAACTAGATTTGTCGTTGAAGCGAGTTAGGTCAAGACAGAGCCAACATATACTTGAACAGCTTTCAGATCTTCAGAGGAAGGAAAAGATGCTACTAGAAGCAAACGATGAATTGAGAAGGAAGTTGGAAGAAAGTAATGAAGGCCTTCAACGTTCCTGGAAAGCAAAGCAGCTAAGTATTCCAAATGGCCACCCGTCTACTGCTCAATCAGATCAAGGTTTATTTGAGCGTTTACAATGCAACAACAAAGCACTGCAGATAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008134 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010093 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0046983 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:1901363 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

160

Amino Acids

18.9

Weight (kDa)

6.21

Isoelectric Point (pI)

64.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	28 - 115	3.8e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03710 AT2G03710 AT2G03710
fragaria_vesca	FvH4_4g29610 FvH4_4g29610 FvH4_4g29610 FvH4_4g29610
malus_domestica	MD13G1059300.v1.1 MD16G1058600.v1.1
prunus_persica	Prupe.1G290500_v2.0.a1 Prupe.1G290500_v2.0.a1
pyrus_communis	pycom13g05280
rosa_chinensis	RchiOBHm_Chr4g0437851
rosa_laevigata	RLG00000006407
rosa_multiflora	Rmu_sc0004193.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379020
rosa_rugosa	Rorug04G0304500 Rorug04G0304600 Rorug04G0304700.1
rosa_samantha	Rh4AG356600 Rh4BG367400 Rh4CG381500 Rh4DG361800
rosa_wichuraiana	Rw0G011600 Rw0G016080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	413
AciI	CCGC	1 cut(s)	68
AclI	AACGTT	1 cut(s)	367
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	235, 272, 365
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	4 cut(s)	199, 208, 277, 388
AluI	AGCT	4 cut(s)	199, 208, 277, 388
Alw26I	GTCTC	1 cut(s)	148
AoxI	GGCC	2 cut(s)	358, 403
ApeKI	GCWGC	3 cut(s)	56, 205, 385
ApoI	RAATTY	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	68, 217, 397
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	221, 311
BfmI	CTRYAG	1 cut(s)	470
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	57, 206, 386
BlsI	GCNGC	3 cut(s)	58, 207, 387
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	29
BpuEI	CTTGAG	3 cut(s)	50, 221, 230
Bse1I	ACTGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	68, 217, 397
BshFI	GGCC	2 cut(s)	360, 405
BsiWI	CGTACG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	360, 405
Bsp143I	GATC	2 cut(s)	283, 427
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	360, 405
BspCNI	CTCAG	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	283, 427
Bst2UI	CCWGG	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	81, 389
BstKTI	GATC	2 cut(s)	286, 430
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	283, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 205
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	68, 217, 397
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	360, 405
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	59, 467
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	8 cut(s)	76, 199, 208, 258, 277, 360, 388, 405
CviKI_1	RGCY	8 cut(s)	76, 199, 208, 258, 277, 360, 388, 405
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	81, 389
DpnI	GATC	2 cut(s)	285, 429
DpnII	GATC	2 cut(s)	283, 427
EaeI	YGGCCR	1 cut(s)	403
Eco147I	AGGCCT	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	1 cut(s)	19
FaiI	YATR	8 cut(s)	8, 10, 17, 54, 102, 111, 264, 266
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FatI	CATG	1 cut(s)	15
FauI	CCCGC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	3 cut(s)	57, 206, 386
Fsp4HI	GCNGC	3 cut(s)	57, 206, 386
FspBI	CTAG	2 cut(s)	221, 311
GluI	GCNGC	3 cut(s)	57, 206, 386
HaeIII	GGCC	2 cut(s)	360, 405
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	414, 449
Hpy188I	TCNGA	4 cut(s)	84, 283, 291, 427
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	414, 449
HpyAV	CCTTC	4 cut(s)	289, 327, 350, 371
HpyCH4IV	ACGT	2 cut(s)	145, 367
HpyCH4V	TGCA	3 cut(s)	56, 456, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 205
HpyF3I	CTNAG	2 cut(s)	81, 389
HpySE526I	ACGT	2 cut(s)	145, 367
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	283, 427
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	47, 90, 358, 385
Lsp1109I	GCAGC	3 cut(s)	68, 217, 397
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	221, 311
MaeII	ACGT	2 cut(s)	145, 367
MalI	GATC	2 cut(s)	285, 429
MboI	GATC	2 cut(s)	283, 427
MboII	GAAGA	6 cut(s)	34, 54, 116, 182, 278, 356
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	2 cut(s)	181, 326
MluNI	TGGCCA	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	2 cut(s)	127, 285
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	65, 205
NdeII	GATC	2 cut(s)	283, 427
NlaIII	CATG	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	360
Pfl23II	CGTACG	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	58, 207, 387
PpuMI	RGGWCCY	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspLI	CGTACG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SatI	GCNGC	3 cut(s)	57, 206, 386
Sau3AI	GATC	2 cut(s)	283, 427
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	3 cut(s)	29, 200, 209
SmoI	CTYRAG	3 cut(s)	29, 200, 209
Sse9I	AATT	2 cut(s)	181, 326
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	221, 311
StuI	AGGCCT	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	371
TaiI	ACGT	2 cut(s)	148, 370
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	181, 326
TscAI	CASTG	2 cut(s)	66, 474
TseI	GCWGC	3 cut(s)	56, 205, 385
TspDTI	ATGAA	4 cut(s)	117, 231, 339, 369
TspRI	CASTG	2 cut(s)	66, 474
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	2 cut(s)	221, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.