Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001806

Physical Location & Seq

Genomic Coordinates Forward (+)

1966610 .. 1968142

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTTCCAAGACTTTGCTTCTTTTGGGTCTCTTTGCATTTCTTTTCATCGTCTCAGAAATGGCTGCCGCGGGCACGGTGAAGTCAGAGAGTGAGGAAACTGTGAAACCTGAACAACATGGTGGTGGATTCGGTGACAATGGAGGAGGAAGATACCAAGGAGGAGGCGGCCATGGTGGCCACGGAGGGGGAGGATACCAAGGAGGAGGAGGACGATACCAAGGAGGCGGTGGGCGACAAGGAGGAGGGGGAAGTTACTGCCGCCACGGCTGCTGCTACAAAGGTTACCATGGCTGCTCAAGGTGTTGTTCATATGCCGGAGAAGCGGTTCAGACTCAGTCTGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0006950 GO:0007275 GO:0008150 GO:0008361 GO:0009269 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0014070 GO:0016043 GO:0016049 GO:0022622 GO:0032501 GO:0032502 GO:0032535 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042493 GO:0046677 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097305 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRP

Protein Analysis

116

Amino Acids

11.59

Weight (kDa)

8.24

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRP	PF07172	17 - 79	4.2e-17	Glycine rich protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05380 AT2G05380 AT2G05380 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05440 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05510 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05520 AT2G05530 AT2G05530 AT2G05540
fragaria_vesca	FvH4_6g41660
malus_domestica	MD09G1118100.v1.1 MD09G1118600.v1.1
prunus_persica	Prupe.3G205800_v2.0.a1
pyrus_communis	pycom09g04330 pycom09g04360
rosa_chinensis	RchiOBHm_Chr2g0157371
rosa_laevigata	RLG00000020983 RLG00000020984
rosa_multiflora	Rmu_sc0000126.1_g000006 Rmu_sc0000126.1_g000021 Rmu_sc0000195.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092250 Rroxscaffold_2G00092310
rosa_rugosa	Rorug02G0460500
rosa_samantha	Rh2AG525100 Rh2BG539200 Rh2CG509800 Rh2DG548300
rosa_wichuraiana	Rw2G043460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AciI	CCGC	6 cut(s)	69, 71, 168, 228, 262, 326
AcoI	YGGCCR	2 cut(s)	169, 178
AfiI	CCNNNNNNNGG	1 cut(s)	187
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
Alw26I	GTCTC	2 cut(s)	35, 58
AoxI	GGCC	2 cut(s)	169, 178
ApeKI	GCWGC	4 cut(s)	65, 270, 273, 294
Asp700I	GAANNNNTTC	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	91, 146
BaeGI	GKGCMC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	52, 257, 260, 281
BceAI	ACGGC	1 cut(s)	283
BciVI	GTATCC	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	35, 58
BfuI	GTATCC	1 cut(s)	188
BglI	GCCNNNNNGGC	2 cut(s)	177, 267
BisI	GCNGC	7 cut(s)	66, 69, 169, 262, 271, 274, 295
BlsI	GCNGC	7 cut(s)	67, 70, 170, 263, 272, 275, 296
BpuEI	CTTGAG	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	8 cut(s)	69, 157, 172, 181, 199, 220, 265, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseDI	CCNNGG	8 cut(s)	69, 157, 172, 181, 199, 220, 265, 289
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	69, 350
BseRI	GAGGAG	5 cut(s)	159, 177, 219, 222, 258
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	52, 257, 260, 281
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	171, 180
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	35, 58
BsmBI	CGTCTC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	171, 180
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp19I	CCATGG	2 cut(s)	172, 289
BspACI	CCGC	6 cut(s)	69, 71, 168, 228, 262, 326
BspANI	GGCC	2 cut(s)	171, 180
BspCNI	CTCAG	2 cut(s)	68, 349
BspFNI	CGCG	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	35
BssECI	CCNNGG	8 cut(s)	69, 157, 172, 181, 199, 220, 265, 289
BssT1I	CCWWGG	5 cut(s)	157, 172, 199, 220, 289
Bst4CI	ACNGT	2 cut(s)	79, 103
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	55, 336
BstDSI	CCRYGG	5 cut(s)	69, 172, 181, 265, 289
BstEII	GGTNACC	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	71
BstMAI	GTCTC	2 cut(s)	35, 58
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 267, 270, 323
BstPI	GGTNACC	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	52, 257, 260, 281
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	171, 180
BtgI	CCRYGG	5 cut(s)	69, 172, 181, 265, 289
Cac8I	GCNNGC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	72
CviAII	CATG	3 cut(s)	119, 173, 290
CviJI	RGCY	6 cut(s)	5, 65, 171, 180, 270, 294
CviKI_1	RGCY	6 cut(s)	5, 65, 171, 180, 270, 294
DdeI	CTNAG	2 cut(s)	55, 336
EaeI	YGGCCR	2 cut(s)	169, 178
Eco130I	CCWWGG	5 cut(s)	157, 172, 199, 220, 289
Eco31I	GGTCTC	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoT14I	CCWWGG	5 cut(s)	157, 172, 199, 220, 289
ErhI	CCWWGG	5 cut(s)	157, 172, 199, 220, 289
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	3 cut(s)	122, 176, 293
FaiI	YATR	5 cut(s)	120, 174, 291, 313, 315
FatI	CATG	3 cut(s)	118, 172, 289
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	7 cut(s)	66, 69, 169, 262, 271, 274, 295
Fsp4HI	GCNGC	7 cut(s)	66, 69, 169, 262, 271, 274, 295
GluI	GCNGC	7 cut(s)	66, 69, 169, 262, 271, 274, 295
HaeIII	GGCC	2 cut(s)	171, 180
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	3 cut(s)	122, 176, 293
HinfI	GANTC	2 cut(s)	129, 334
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	2 cut(s)	91, 146
Hpy188I	TCNGA	3 cut(s)	58, 88, 333
HpyCH4III	ACNGT	2 cut(s)	79, 103
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 267, 270, 323
HpyF3I	CTNAG	2 cut(s)	55, 336
Hsp92II	CATG	3 cut(s)	122, 176, 293
KspI	CCGCGG	1 cut(s)	72
LpnPI	CCDG	3 cut(s)	123, 327, 331
Lsp1109I	GCAGC	4 cut(s)	52, 257, 260, 281
MaeIII	GTNAC	4 cut(s)	134, 254, 284, 344
MboII	GAAGA	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	4 cut(s)	177, 267, 270, 323
NcoI	CCATGG	2 cut(s)	172, 289
NdeI	CATATG	1 cut(s)	313
NlaIII	CATG	3 cut(s)	122, 176, 293
NmuCI	GTSAC	2 cut(s)	134, 344
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	7 cut(s)	67, 70, 170, 263, 272, 275, 296
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	284
PsyI	GACNNNGTC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	123
SacII	CCGCGG	1 cut(s)	72
SatI	GCNGC	7 cut(s)	66, 69, 169, 262, 271, 274, 295
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	3 cut(s)	112, 286, 305
SfiI	GGCCNNNNNGGCC	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SsiI	CCGC	6 cut(s)	69, 71, 168, 228, 262, 326
StyI	CCWWGG	5 cut(s)	157, 172, 199, 220, 289
TaaI	ACNGT	2 cut(s)	79, 103
TauI	GCSGC	3 cut(s)	71, 171, 264
TfiI	GAWTC	1 cut(s)	129
TseFI	GTSAC	2 cut(s)	134, 344
TseI	GCWGC	4 cut(s)	65, 270, 273, 294
Tsp45I	GTSAC	2 cut(s)	134, 344
TspDTI	ATGAA	2 cut(s)	37, 300
TspGWI	ACGGA	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.