Rroxscaffold_2G00092250

Glycine-rich protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001806
Physical Location & Seq
Forward (+)
13786092 .. 13786522
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092250.1

Sequence Viewer

Length: 354 bp
ATGAGTTCCAACAAGGCTCTTCTTCTCTTGGCTCTTTTGGTTGCTCTTGTTCTTGTCGTGGCCGCAAGCAGAGACCTCGCTCAGACATCTACTAAGAAGGAAAATGAGGTGACCACCGCAAGTTCCAATGTAGGCGGCGTAGATGATGCCAAGTACGGTGGATATGGAGGCCCCGGAGGTGGCTACCAAGGTGGTAATGGCGGCAACGGAGGCTACGGTGGAGGAAATCCTGGTTATGGAGGAGGACGAGGAGGAGGGTGTTACTATGGCTGCTGCAGGCGCCCTAACTATGGAAGAGGGTGCAGAAGGTGCTGCTCTTACGCTGGGGAGGCAGTTGATAGTGCAGAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRP

Protein Analysis

117

Amino Acids

11.61

Weight (kDa)

8.55

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRP PF07172 1 - 87 1.1e-12 Glycine rich protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 279
AciI CCGC 4 cut(s) 63, 117, 135, 201
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 179, 236, 290
AjnI CCWGG 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 2 cut(s) 60, 169
ApeKI GCWGC 3 cut(s) 270, 273, 312
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 257, 260, 299
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 283
BisI GCNGC 6 cut(s) 63, 136, 202, 271, 274, 313
BlsI GCNGC 6 cut(s) 64, 137, 203, 272, 275, 314
Bme1390I CCNGG 2 cut(s) 174, 231
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 172, 281
BmrFI CCNGG 2 cut(s) 174, 231
BmsI GCATC 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 172, 187
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 236, 290
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 172, 187
BseLI CCNNNNNNNGG 3 cut(s) 179, 236, 290
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 3 cut(s) 255, 264, 267
BseXI GCAGC 3 cut(s) 257, 260, 299
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 2 cut(s) 62, 171
BshNI GGYRCC 1 cut(s) 279
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 179, 236, 290
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 2 cut(s) 62, 171
Bso31I GGTCTC 1 cut(s) 66
BspACI CCGC 4 cut(s) 63, 117, 135, 201
BspANI GGCC 2 cut(s) 62, 171
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 172, 281
BspMAI CTGCAG 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 172, 187
BssNI GRCGYC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 158, 218
Bst6I CTCTTC 2 cut(s) 24, 289
BstACI GRCGYC 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 67, 278
BstDEI CTNAG 2 cut(s) 81, 93
BstEII GGTNACC 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 210, 279, 309, 329
BstNI CCWGG 1 cut(s) 231
BstPI GGTNACC 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 172, 229
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 3 cut(s) 257, 260, 299
BsuRI GGCC 2 cut(s) 62, 171
Cac8I GCNNGC 2 cut(s) 67, 278
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviJI RGCY 7 cut(s) 17, 32, 62, 171, 183, 213, 270
CviKI_1 RGCY 7 cut(s) 17, 32, 62, 171, 183, 213, 270
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 81, 93
DinI GGCGCC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 24, 289
EarI CTCTTC 2 cut(s) 24, 289
Eco130I CCWWGG 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 281
EheI GGCGCC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 187
FaiI YATR 4 cut(s) 165, 237, 267, 291
Fnu4HI GCNGC 6 cut(s) 63, 136, 202, 271, 274, 313
Fsp4HI GCNGC 6 cut(s) 63, 136, 202, 271, 274, 313
GlaI GCGC 1 cut(s) 281
GluI GCNGC 6 cut(s) 63, 136, 202, 271, 274, 313
GsaI CCCAGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 2 cut(s) 62, 171
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 280
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 84
HpyAV CCTTC 2 cut(s) 91, 300
HpyCH4III ACNGT 2 cut(s) 158, 218
HpyCH4V TGCA 3 cut(s) 276, 303, 344
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 279, 309, 329
HpyF3I CTNAG 2 cut(s) 81, 93
Hsp92I GRCGYC 1 cut(s) 280
HspAI GCGC 1 cut(s) 280
KasI GGCGCC 1 cut(s) 279
LguI GCTCTTC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 187, 216, 243, 262, 309
Lsp1109I GCAGC 3 cut(s) 257, 260, 299
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 109, 260
MboII GAAGA 3 cut(s) 11, 14, 306
Mly113I GGCGCC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 33
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 174, 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 4 cut(s) 210, 279, 309, 329
NarI GGCGCC 1 cut(s) 280
NciI CCSGG 1 cut(s) 174
NlaIV GGNNCC 2 cut(s) 172, 281
NmuCI GTSAC 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 24
PkrI GCNGC 6 cut(s) 64, 137, 203, 272, 275, 314
PluTI GGCGCC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 172, 281
PspPI GGNCC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 278
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 24
SatI GCNGC 6 cut(s) 63, 136, 202, 271, 274, 313
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 174, 231
SetI ASST 5 cut(s) 78, 111, 181, 193, 311
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 274
SfoI GGCGCC 1 cut(s) 281
SsiI CCGC 4 cut(s) 63, 117, 135, 201
SspDI GGCGCC 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 172, 229
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 158, 218
TauI GCSGC 3 cut(s) 65, 138, 204
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 270, 273, 312
Tsp45I GTSAC 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.